Literature DB >> 9092649

Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates.

M Itoh1, P Carninci, S Nagaoka, N Sasaki, Y Okazaki, T Ohsumi, M Muramatsu, Y Hayashizaki.   

Abstract

We developed a new simple high-throughput plasmid DNA extraction procedure, based on a modified alkaline lysis method, using only one 96-well microtiter glassfilter plate. In this method, cell harvesting, lysis by alkaline and plasmid purification are performed on only one microtiter glassfilter plate. After washing out RNAs or other contaminants, plasmid DNA is eluted by low-ion strength solution, although precipitated chromosomal DNA is not eluted. The plasmid prepared by this method can be applied to sequencing reactions or restriction enzyme cleavage.

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Year:  1997        PMID: 9092649      PMCID: PMC146577          DOI: 10.1093/nar/25.6.1315

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

2.  A high-throughput plasmid DNA preparation method.

Authors:  G M Huang; K Wang; C Kuo; B Paeper; L Hood
Journal:  Anal Biochem       Date:  1994-11-15       Impact factor: 3.365

3.  Method for 96-well M13 DNA template preparations for large-scale sequencing.

Authors:  B Andersson; J Lu; K E Edwards; D M Muzny; R A Gibbs
Journal:  Biotechniques       Date:  1996-06       Impact factor: 1.993

4.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

5.  A filtration method for plasmid isolation using microtiter filter plates.

Authors:  A Ruppert; B Szalay; D van den Boom; G Horst; H Köster
Journal:  Anal Biochem       Date:  1995-09-01       Impact factor: 3.365

6.  Rapid and efficient cosmid cloning.

Authors:  D Ish-Horowicz; J F Burke
Journal:  Nucleic Acids Res       Date:  1981-07-10       Impact factor: 16.971

  6 in total
  7 in total

1.  RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

Authors:  K Shibata; M Itoh; K Aizawa; S Nagaoka; N Sasaki; P Carninci; H Konno; J Akiyama; K Nishi; T Kitsunai; H Tashiro; M Itoh; N Sumi; Y Ishii; S Nakamura; M Hazama; T Nishine; A Harada; R Yamamoto; H Matsumoto; S Sakaguchi; T Ikegami; K Kashiwagi; S Fujiwake; K Inoue; Y Togawa
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

2.  Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.

Authors:  P Carninci; Y Shibata; N Hayatsu; Y Sugahara; K Shibata; M Itoh; H Konno; Y Okazaki; M Muramatsu; Y Hayashizaki
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

3.  Automated filtration-based high-throughput plasmid preparation system.

Authors:  M Itoh; T Kitsunai; J Akiyama; K Shibata; M Izawa; J Kawai; Y Tomaru; P Carninci; Y Shibata; Y Ozawa; M Muramatsu; Y Okazaki; Y Hayashizaki
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

4.  Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.

Authors:  Piero Carninci; Kazunori Waki; Toshiyuki Shiraki; Hideaki Konno; Kazuhiro Shibata; Masayoshi Itoh; Katsunori Aizawa; Takahiro Arakawa; Yoshiyuki Ishii; Daisuke Sasaki; Hidemasa Bono; Shinji Kondo; Yuichi Sugahara; Rintaro Saito; Naoki Osato; Shiro Fukuda; Kenjiro Sato; Akira Watahiki; Tomoko Hirozane-Kishikawa; Mari Nakamura; Yuko Shibata; Ayako Yasunishi; Noriko Kikuchi; Atsushi Yoshiki; Moriaki Kusakabe; Stefano Gustincich; Kirk Beisel; William Pavan; Vassilis Aidinis; Akira Nakagawara; William A Held; Hiroo Iwata; Tomohiro Kono; Hiromitsu Nakauchi; Paul Lyons; Christine Wells; David A Hume; Michela Fagiolini; Takao K Hensch; Michelle Brinkmeier; Sally Camper; Junji Hirota; Peter Mombaerts; Masami Muramatsu; Yasushi Okazaki; Jun Kawai; Yoshihide Hayashizaki
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

5.  Mapping of 19032 mouse cDNAs on mouse chromosomes.

Authors:  Itaru Yamanaka; Hidenori Kiyosawa; Shinji Kondo; Tetsuya Saito; Piero Carninci; Akira Shinagawa; Katsunori Aizawa; Shiro Fukuda; Ayako Hara; Masayoshi Itoh; Jun Kawai; Kazuhiro Shibata; Takahiro Arakawa; Yoshiyuki Ishii; Yoshihide Hayashizaki
Journal:  J Struct Funct Genomics       Date:  2002

6.  Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes.

Authors:  Debra A Dederich; Geoffrey Okwuonu; Toni Garner; Amanda Denn; Angelica Sutton; Michael Escotto; Ashley Martindale; Oliver Delgado; Donna M Muzny; Richard A Gibbs; Michael L Metzker
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

7.  The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene.

Authors:  S Okada; T Sone; M Fujisawa; S Nakayama; M Takenaka; K Ishizaki; K Kono; Y Shimizu-Ueda; T Hanajiri; K T Yamato; H Fukuzawa; A Brennicke; K Ohyama
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

  7 in total

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