Literature DB >> 9091634

Role of random genetic drift in the evolution of interactive systems.

T Ohta1.   

Abstract

Through comparative studies of DNA sequences it has become possible to test the neutral and the selection theories of molecular evolution. The separate estimation of the numbers of synonymous and non-synonymous substitutions is one of the most powerful tools for detecting selection. The patterns on the average and variance of these two types of substitutions of mammalian genes turned out to be in accord with the slightly deleterious or the nearly neutral mutation theory for non-synonymous changes. Interactive systems at the amino acid level were suggested to be responsible for such nearly neutral or very weak selection. An attractive model is the NK model of Kauffman, which assumes that each amino acid makes a fitness contribution that depends upon the amino acid and upon K other amino acids among the N that make the protein. It is known that the fitness landscape is very rugged for K > or = 2. Population genetic analysis of this model suggest that protein evolution obeys the nearly neutral theory and that random genetic drift is important. In other words, evolution becomes rapid in small populations because proportion of near-neutrality increases among new mutations, and proteins as interactive systems evolve by shifting through random genetic drift on the multipeaked fitness landscape.

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Year:  1997        PMID: 9091634     DOI: 10.1007/pl00000054

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  27 in total

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Authors:  T Ohta; H Tachida
Journal:  Genetics       Date:  1990-09       Impact factor: 4.562

2.  The selection-mutation-drift theory of synonymous codon usage.

Authors:  M Bulmer
Journal:  Genetics       Date:  1991-11       Impact factor: 4.562

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Authors:  M Long; C H Langley
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4.  THE MOLECULAR CLOCK AND THE RELATIONSHIP BETWEEN POPULATION SIZE AND GENERATION TIME.

Authors:  Lin Chao; David E Carr
Journal:  Evolution       Date:  1993-04       Impact factor: 3.694

5.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

6.  On the constancy of the evolutionary rate of cistrons.

Authors:  T Ota; M Kimura
Journal:  J Mol Evol       Date:  1971       Impact factor: 2.395

7.  Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory.

Authors:  T Ohta
Journal:  J Mol Evol       Date:  1995-01       Impact factor: 2.395

8.  Variance to mean ratio, R(t), for poisson processes on phylogenetic trees.

Authors:  N Goldman
Journal:  Mol Phylogenet Evol       Date:  1994-09       Impact factor: 4.286

9.  Adaptive protein evolution at the Adh locus in Drosophila.

Authors:  J H McDonald; M Kreitman
Journal:  Nature       Date:  1991-06-20       Impact factor: 49.962

10.  Evidence for adaptive evolution of the G6pd gene in the Drosophila melanogaster and Drosophila simulans lineages.

Authors:  W F Eanes; M Kirchner; J Yoon
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

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  4 in total

1.  Near-neutrality in evolution of genes and gene regulation.

Authors:  Tomoko Ohta
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

2.  Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites.

Authors:  Ville Mustonen; Justin Kinney; Curtis G Callan; Michael Lässig
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-22       Impact factor: 11.205

3.  Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model.

Authors:  Johannes Neidhart; Ivan G Szendro; Joachim Krug
Journal:  Genetics       Date:  2014-08-13       Impact factor: 4.562

4.  Evolution of a tumorigenic property conferred by glycophosphatidyl-inositol membrane anchors of carcinoembryonic antigen gene family members during the primate radiation.

Authors:  Fakhraddin Naghibalhossaini; Anne D Yoder; Martin Tobi; Clifford P Stanners
Journal:  Mol Biol Cell       Date:  2007-02-07       Impact factor: 4.138

  4 in total

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