Literature DB >> 9041653

Importance of van der Waals contact between Glu 35 and Trp 109 to the catalytic action of human lysozyme.

M Muraki1, S Goda, H Nagahora, K Harata.   

Abstract

The importance of van der Waals contact between Glu 35 and Trp 109 to the active-site structure and the catalytic properties of human lysozyme (HL) has been investigated by site-directed mutagenesis. The X-ray analysis of mutant HLs revealed that both the replacement of Glu 35 by Asp or Ala, and the replacement of Trp 109 by Phe or Ala resulted in a significant but localized change in the active-site cleft geometry. A prominent movement of the backbone structure was detected in the region of residues 110 to 120 and in the region of residues 100 to 115 for the mutations concerning Glu 35 and Trp 109, respectively. Accompanied by the displacement of the main-chain atoms with a maximal deviation of C alpha atom position ranging from 0.7 A to 1.0 A, the mutant HLs showed a remarkable change in the catalytic properties against Micrococcus luteus cell substrate as compared with native HL. Although the replacement of Glu 35 by Ala completely abolished the lytic activity, HL-Asp 35 mutant retained a weak but a certain lytic activity, showing the possible involvement of the side-chain carboxylate group of Asp 35 in the catalytic action. The kinetic consequence derived from the replacement of Trp 109 by Phe or Ala together with the result of the structural change suggested that the structural detail of the cleft lobe composed of the residues 100 to 115 centered at Ala 108 was responsible for the turnover in the reaction of HL against the bacterial cell wall substrate. The results revealed that the van der Waals contact between Glu 35 and Trp 109 was an essential determinant in the catalytic action of HL.

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Year:  1997        PMID: 9041653      PMCID: PMC2143631          DOI: 10.1002/pro.5560060227

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  8 in total

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Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

2.  Apparent affinity constants of lysozymes from different origins forMicrococcus lysodeikticus cells.

Authors:  J P Locquet; J Saint-Blancard; P Jollès
Journal:  Biochim Biophys Acta       Date:  1968-08-27

3.  A kinetic analysis of the reaction of lysozyme with oligosaccharides from bacterial cell walls.

Authors:  D M Chipman
Journal:  Biochemistry       Date:  1971-04-27       Impact factor: 3.162

4.  Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling.

Authors:  M Muraki; K Harata; N Sugita; K Sato
Journal:  Biochemistry       Date:  1996-10-22       Impact factor: 3.162

5.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

6.  Refinement of human lysozyme at 1.5 A resolution analysis of non-bonded and hydrogen-bond interactions.

Authors:  P J Artymiuk; C C Blake
Journal:  J Mol Biol       Date:  1981-11-15       Impact factor: 5.469

7.  Prediction of the three-dimensional structures of complexes of lysozyme with cell wall substrates.

Authors:  M R Pincus; H A Scheraga
Journal:  Biochemistry       Date:  1981-07-07       Impact factor: 3.162

8.  Surface charge measurements on Micrococcus lysodeikticus and the catalytic implications for lysozyme.

Authors:  J A Price; R Pethig
Journal:  Biochim Biophys Acta       Date:  1986-11-28
  8 in total
  2 in total

1.  Analysis of the internal motion of free and ligand-bound human lysozyme by use of 15N NMR relaxation measurement: a comparison with those of hen lysozyme.

Authors:  S Mine; T Ueda; Y Hashimoto; T Imoto
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Biophysical Insight into the Interaction of Human Lysozyme with Anticancer Drug Anastrozole: A Multitechnique Approach.

Authors:  Fahad M Almutairi; Mohammad Rehan Ajmal; Adel Ibrahim Al Alawy; Rizwan Hasan Khan; Ali Saber Abdelhameed
Journal:  ScientificWorldJournal       Date:  2020-08-25
  2 in total

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