Literature DB >> 9037716

Large differences are observed between the crystal and solution quaternary structures of allosteric aspartate transcarbamylase in the R state.

D I Svergun1, C Barberato, M H Koch, L Fetler, P Vachette.   

Abstract

Solution scattering curves evaluated from the crystal structures of the T and R states of the allosteric enzyme aspartate transcarbamylase from Escherichia coli were compared with the experimental x-ray scattering patterns. Whereas the scattering from the crystal structure of the T state agrees with the experiment, large deviations reflecting a significant difference between the quaternary structures in the crystal and in solution are observed for the R state. The experimental curve of the R state was fitted by rigid body movements of the subunits in the crystal R structure which displace the latter further away from the T structure along the reaction coordinates of the T-->R transition observed in the crystals. Taking the crystal R structure as a-reference, it was found that in solution the distance between the catalytic trimers along the threefold axis is 0.34 nm larger and the trimers are rotated by 11 degrees in opposite directions around the same axis; each of the three regulatory dimers is rotated by 9 degrees around the corresponding twofold axis and displaced by 0.14 nm away from the molecular center along this axis.

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Year:  1997        PMID: 9037716

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  14 in total

1.  Addition of missing loops and domains to protein models by x-ray solution scattering.

Authors:  Maxim V Petoukhov; Nigel A J Eady; Katherine A Brown; Dmitri I Svergun
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

2.  Direct observation in solution of a preexisting structural equilibrium for a mutant of the allosteric aspartate transcarbamoylase.

Authors:  Luc Fetler; Evan R Kantrowitz; Patrice Vachette
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

3.  The origin of the electrostatic perturbation in acetoacetate decarboxylase.

Authors:  Meng-Chiao Ho; Jean-François Ménétret; Hiro Tsuruta; Karen N Allen
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

4.  Structural basis of outer membrane protein biogenesis in bacteria.

Authors:  Reinhard Albrecht; Kornelius Zeth
Journal:  J Biol Chem       Date:  2011-05-17       Impact factor: 5.157

5.  Interpretation of solution x-ray scattering by explicit-solvent molecular dynamics.

Authors:  Po-Chia Chen; Jochen S Hub
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

Review 6.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

7.  Allosteric signal transmission involves synergy between discrete structural units of the regulatory subunit of aspartate transcarbamoylase.

Authors:  L Liu; M E Wales; J R Wild
Journal:  Arch Biochem Biophys       Date:  2000-01-15       Impact factor: 4.013

8.  Protein hydration in solution: experimental observation by x-ray and neutron scattering.

Authors:  D I Svergun; S Richard; M H Koch; Z Sayers; S Kuprin; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

9.  Replacement of Asp-162 by Ala prevents the cooperative transition by the substrates while enhancing the effect of the allosteric activator ATP on E. coli aspartate transcarbamoylase.

Authors:  L Fetler; P Tauc; D P Baker; C P Macol; E R Kantrowitz; P Vachette
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

10.  A model of the quaternary structure of the Escherichia coli F1 ATPase from X-ray solution scattering and evidence for structural changes in the delta subunit during ATP hydrolysis.

Authors:  D I Svergun; I Aldag; T Sieck; K Altendorf; M H Koch; D J Kane; M B Kozin; G Grüber
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

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