Literature DB >> 901905

Theory of the delocalized binding of Mg(II) to DNA: preliminary analysis for low binding levels.

G S Manning.   

Abstract

A simple theoretical equation for the binding of Mg2+ to DNA in the presence of excess 1:1 salt is derived from a model that does not specify discrete binding sites but rather allows the associated metal ions to move freely near the surface of the DNA polyion. Use of a numerical value for the free volume, determined uniquely, in a separate communication, by a free energy minimization, leads to predicted values for the Mg2+ binding constant that are in essential agreement with measured values taken from the literature.

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Year:  1977        PMID: 901905     DOI: 10.1016/0301-4622(77)80006-9

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  7 in total

1.  RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.

Authors:  Serdal Kirmizialtin; Suzette A Pabit; Steve P Meisburger; Lois Pollack; Ron Elber
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations.

Authors:  Serdal Kirmizialtin; Alexander R J Silalahi; Ron Elber; Marcia O Fenley
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

3.  Metal-ion rescue revisited: biochemical detection of site-bound metal ions important for RNA folding.

Authors:  John K Frederiksen; Nan-Sheng Li; Rhiju Das; Daniel Herschlag; Joseph A Piccirilli
Journal:  RNA       Date:  2012-04-26       Impact factor: 4.942

4.  Theoretical assessment of the oligolysine model for ionic interactions in protein-DNA complexes.

Authors:  Marcia O Fenley; Cristina Russo; Gerald S Manning
Journal:  J Phys Chem B       Date:  2011-07-26       Impact factor: 2.991

5.  Effect of salts on abortive and productive elongation catalysed by wheat germ RNA polymerase II.

Authors:  J Dietrich; M Teissere; C Job; D Job
Journal:  Nucleic Acids Res       Date:  1986-02-25       Impact factor: 16.971

6.  Computational exploration of mobile ion distributions around RNA duplex.

Authors:  Serdal Kirmizialtin; Ron Elber
Journal:  J Phys Chem B       Date:  2010-06-24       Impact factor: 2.991

7.  The interaction of polyamines with DNA: a 23Na NMR study.

Authors:  D R Burton; S Forsén; P Reimarsson
Journal:  Nucleic Acids Res       Date:  1981-03-11       Impact factor: 16.971

  7 in total

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