Literature DB >> 9016682

Nucleic acid scanning-by-hybridization of enterohemorrhagic Escherichia coli isolates using oligodeoxynucleotide arrays.

N M Salazar1, G Caetano-Anollés.   

Abstract

Nucleic acid scanning by hybridization (NASBH) is a non-electrophoretic typing strategy that uses gridded oligonucleotides to reproducibly characterize arbitrarily amplified nucleic acid sequences. Membrane-bound arrays of terminally-degenerate oligonucleotides were hybridized to DNA amplification fingerprinting (DAF) products from enterohemorrhagic Escherichia coli O157:H7 isolates. Numerical and cluster analysis of 64 isolates, selected by DAF to represent a single dominant amplification type identified 14 hybridization types. Results show that NASBH is a powerful alternative for the identification of closely related bacteria, can be used successfully in epidemiological studies, and holds potential in general nucleic acid diagnostics.

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Year:  1996        PMID： 9016682      PMCID： PMC146331          DOI： 10.1093/nar/24.24.5056

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  DNA amplification fingerprinting using very short arbitrary oligonucleotide primers.

Authors:  G Caetano-Anollés; B J Bassam; P M Gresshoff
Journal:  Biotechnology (N Y)       Date:  1991-06

2.  DNA amplification fingerprinting of bacteria.

Authors:  B J Bassam; G Caetano-Anollés; P M Gresshoff
Journal:  Appl Microbiol Biotechnol       Date:  1992-10       Impact factor: 4.813

3.  Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides.

Authors:  G Caetano-Anollés; B J Bassam; P M Gresshoff
Journal:  Mol Gen Genet       Date:  1992-11

4.  DNA chips: analysing sequence by hybridization to oligonucleotides on a large scale.

Authors:  E M Southern
Journal:  Trends Genet       Date:  1996-03       Impact factor: 11.639

5.  Subtyping of Streptococcus uberis by DNA amplification fingerprinting.

Authors:  B M Jayarao; B J Bassam; G Caetano-Anollés; P M Gresshoff; S P Oliver
Journal:  J Clin Microbiol       Date:  1992-05       Impact factor: 5.948

6.  Reliable hybridization of oligonucleotides as short as six nucleotides.

Authors:  R Drmanac; Z Strezoska; I Labat; S Drmanac; R Crkvenjakov
Journal:  DNA Cell Biol       Date:  1990-09       Impact factor: 3.311

7.  Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea.

Authors:  T S Whittam; M L Wolfe; I K Wachsmuth; F Orskov; I Orskov; R A Wilson
Journal:  Infect Immun       Date:  1993-05       Impact factor: 3.441

8.  Hemorrhagic colitis associated with a rare Escherichia coli serotype.

Authors:  L W Riley; R S Remis; S D Helgerson; H B McGee; J G Wells; B R Davis; R J Hebert; E S Olcott; L M Johnson; N T Hargrett; P A Blake; M L Cohen
Journal:  N Engl J Med       Date:  1983-03-24       Impact factor: 91.245

9.  DNA fingerprinting of Escherichia coli O157:H7 strains by pulsed-field gel electrophoresis.

Authors:  H Böhm; H Karch
Journal:  J Clin Microbiol       Date:  1992-08       Impact factor: 5.948

10.  Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups.

Authors:  J Welsh; C Pretzman; D Postic; I Saint Girons; G Baranton; M McClelland
Journal:  Int J Syst Bacteriol       Date:  1992-07
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  4 in total

1.  Fingerprinting closely related xanthomonas pathovars with random nonamer oligonucleotide microarrays.

Authors:  Mark T Kingsley; Timothy M Straub; Douglas R Call; Don S Daly; Sharon C Wunschel; Darrell P Chandler
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

2.  Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7.

Authors:  Margaret A Davis; Dale D Hancock; Thomas E Besser; Douglas R Call
Journal:  J Clin Microbiol       Date:  2003-05       Impact factor: 5.948

3.  Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates.

Authors:  Alan Willse; Timothy M Straub; Sharon C Wunschel; Jack A Small; Douglas R Call; Don S Daly; Darrell P Chandler
Journal:  Nucleic Acids Res       Date:  2004-03-22       Impact factor: 16.971

4.  Designing a new biosensor "DNA ELISA" to detect Escherichia coli using genomic DNA and comparison of this method to PCR-ELISA.

Authors:  Elaheh Hashemi; Mehdi Forouzandeh
Journal:  J Enzyme Inhib Med Chem       Date:  2018-12       Impact factor: 5.051
  4 in total

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