Literature DB >> 9016647

Screening differentially expressed cDNA clones obtained by differential display using amplified RNA.

G M Poirier1, J Pyati, J S Wan, M G Erlander.   

Abstract

The major obstacle of differential display is not the technique itself but rather the post-differential display issueof discriminating between false positives and the truly differentially expressed mRNAs. This process is arduous and requires large amounts of RNA. We present and validate a method which allows one to screen putative positives from differential display analysis using only micrograms of total RNA. More importantly, we demonstrate that cDNA probes generated from amplified RNA are representative of the starting mRNA population and can be used for differential screening of mRNA species at a detectable limit of sensitivity of>/=1/40 000.

Mesh:

Substances:

Year:  1997        PMID: 9016647      PMCID: PMC146499          DOI: 10.1093/nar/25.4.913

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  Arbitrarily primed PCR fingerprinting of RNA.

Authors:  J Welsh; K Chada; S S Dalal; R Cheng; D Ralph; M McClelland
Journal:  Nucleic Acids Res       Date:  1992-10-11       Impact factor: 16.971

2.  Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.

Authors:  P Liang; A B Pardee
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

3.  Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

Authors:  R N Van Gelder; M E von Zastrow; A Yool; W C Dement; J D Barchas; J H Eberwine
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

Review 4.  mRNA differential display: application in the discovery of novel pharmacological targets.

Authors:  X Wang; R R Ruffolo; G Z Feuerstein
Journal:  Trends Pharmacol Sci       Date:  1996-08       Impact factor: 14.819

5.  Cloning differentially expressed mRNAs.

Authors:  J S Wan; S J Sharp; G M Poirier; P C Wagaman; J Chambers; J Pyati; Y L Hom; J E Galindo; A Huvar; P A Peterson; M R Jackson; M G Erlander
Journal:  Nat Biotechnol       Date:  1996-12       Impact factor: 54.908

6.  Differential screening of gene expression difference enriched by differential display.

Authors:  H Zhang; R Zhang; P Liang
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

  6 in total
  12 in total

1.  High-copy cDNA amplification of minimal total RNA quantities for gene expression analyses.

Authors:  H Schwabe; U Stein; W Walther
Journal:  Mol Biotechnol       Date:  2000-02       Impact factor: 2.695

2.  A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward.

Authors:  S Lievens; S Goormachtig; M Holsters
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

3.  Characterization and regulation of the major histocompatibility complex-encoded proteins Hsp70-Hom and Hsp70-1/2.

Authors:  A M Fourie; P A Peterson; Y Yang
Journal:  Cell Stress Chaperones       Date:  2001-07       Impact factor: 3.667

4.  Efficient reamplification of differential display products by transient ligation and thermal asymmetric PCR.

Authors:  S Bonnet; G Prévot; C Bourgouin
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

5.  Multiple isoform recovery (MIR)-PCR: a simple method for the isolation of related mRNA isoforms.

Authors:  A Fagotti; G Gabbiani; R Pascolini; P Neuville
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

6.  Rapid determination of the complexity of cDNA bands extracted from DDRT-PCR polyacrylamide gels.

Authors:  N R Smith; A Li; M Aldersley; A S High; A F Markham; P A Robinson
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

7.  Investigation into the mechanism of the loss of laminin 5 (alpha3beta3gamma2) expression in prostate cancer.

Authors:  J Hao; L Jackson; R Calaluce; K McDaniel; B L Dalkin; R B Nagle
Journal:  Am J Pathol       Date:  2001-03       Impact factor: 4.307

8.  The human DIMINUTO/DWARF1 homolog seladin-1 confers resistance to Alzheimer's disease-associated neurodegeneration and oxidative stress.

Authors:  I Greeve; I Hermans-Borgmeyer; C Brellinger; D Kasper; T Gomez-Isla; C Behl; B Levkau; R M Nitsch
Journal:  J Neurosci       Date:  2000-10-01       Impact factor: 6.167

9.  Induction of pepper cDNA encoding a lipid transfer protein during the resistance response to tobacco mosaic virus.

Authors:  Chang-Jin Park; Ryoung Shin; Jeong Mee Park; Gil-Je Lee; Jin-Sam You; Kyung-Hee Paek
Journal:  Plant Mol Biol       Date:  2002-02-01       Impact factor: 4.076

Review 10.  Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling.

Authors:  Vigdis Nygaard; Eivind Hovig
Journal:  Nucleic Acids Res       Date:  2006-02-09       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.