Literature DB >> 9016608

Metal ion interaction with cosubstrate in self-splicing of group I introns.

A S Sjögren1, E Pettersson, B M Sjöberg, R Strömberg.   

Abstract

The catalytic mechanism for self-splicing of the group I intron in the pre-mRNA from the nrdB gene in bacteriophage T4 has been investigated using 2'-amino- 2'-deoxyguanosine or guanosine as cosubstrates in the presence of Mg2+, Mn2+and Zn2+. The results show that a divalent metal ion interacts with the cosubstrate and thereby influences the efficiency of catalysis in the first step of splicing. This suggests the existence of a metal ion that catalyses the nucleophilic attack of the cosubstrate. Of particular significance is that the transesterification reactions of the first step of splicing with 2'-amino-2'-deoxyguanosine as cosubstrate are more efficient in mixtures containing either Mn2+or Zn2+together with Mg2+than with only magnesium ions present. The experiments in metal ion mixtures show that two (or more) metal ions are crucial for the self-splicing of group I introns and suggest the possibility that more than one of these have a direct catalytic role. A working model for a two-metal-ion mechanism in the transesterification steps is suggested.

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Year:  1997        PMID: 9016608      PMCID: PMC146470          DOI: 10.1093/nar/25.3.648

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  Stereochemistry of RNA cleavage by the Tetrahymena ribozyme and evidence that the chemical step is not rate-limiting.

Authors:  J A McSwiggen; T R Cech
Journal:  Science       Date:  1989-05-12       Impact factor: 47.728

2.  Structural conservation among three homologous introns of bacteriophage T4 and the group I introns of eukaryotes.

Authors:  D A Shub; J M Gott; M Q Xu; B F Lang; F Michel; J Tomaschewski; J Pedersen-Lane; M Belfort
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

3.  Multiple self-splicing introns in bacteriophage T4: evidence from autocatalytic GTP labeling of RNA in vitro.

Authors:  J M Gott; D A Shub; M Belfort
Journal:  Cell       Date:  1986-10-10       Impact factor: 41.582

4.  A general method for the synthesis of 2'-azido-2'-deoxy- and 2'-amino-2'-deoxyribofuranosyl purines.

Authors:  J B Hobbs; F Eckstein
Journal:  J Org Chem       Date:  1977-02-18       Impact factor: 4.354

5.  Modeling study on the cleavage step of the self-splicing reaction in group I introns.

Authors:  R F Setlik; R Garduno-Juarez; J I Manchester; M Shibata; R L Ornstein; R Rein
Journal:  J Biomol Struct Dyn       Date:  1993-06

6.  Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

Authors:  B L Bass; T R Cech
Journal:  Nature       Date:  1984 Apr 26-May 2       Impact factor: 49.962

7.  The environment of two metal ions surrounding the splice site of a group I intron.

Authors:  B Streicher; E Westhof; R Schroeder
Journal:  EMBO J       Date:  1996-05-15       Impact factor: 11.598

8.  The importance of being ribose at the cleavage site in the Tetrahymena ribozyme reaction.

Authors:  D Herschlag; F Eckstein; T R Cech
Journal:  Biochemistry       Date:  1993-08-17       Impact factor: 3.162

9.  Ribozyme inhibitors: deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor.

Authors:  B L Bass; T R Cech
Journal:  Biochemistry       Date:  1986-08-12       Impact factor: 3.162

10.  The bacteriophage T4 gene for the small subunit of ribonucleotide reductase contains an intron.

Authors:  B M Sjöberg; S Hahne; C Z Mathews; C K Mathews; K N Rand; M J Gait
Journal:  EMBO J       Date:  1986-08       Impact factor: 11.598

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  23 in total

Review 1.  Recent advances in the elucidation of the mechanisms of action of ribozymes.

Authors:  Y Takagi; M Warashina; W J Stec; K Yoshinari; K Taira
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  Inhibition of RNase P RNA cleavage by aminoglycosides.

Authors:  N E Mikkelsen; M Brännvall; A Virtanen; L A Kirsebom
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

3.  Crystal structure of a group I intron splicing intermediate.

Authors:  Peter L Adams; Mary R Stahley; Michelle L Gill; Anne B Kosek; Jimin Wang; Scott A Strobel
Journal:  RNA       Date:  2004-12       Impact factor: 4.942

4.  Exploring purine N7 interactions via atomic mutagenesis: the group I ribozyme as a case study.

Authors:  Marcello Forconi; Tara Benz-Moy; Kristin Rule Gleitsman; Eliza Ruben; Clyde Metz; Daniel Herschlag
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

5.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

6.  Modulation of individual steps in group I intron catalysis by a peripheral metal ion.

Authors:  Marcello Forconi; Joseph A Piccirilli; Daniel Herschlag
Journal:  RNA       Date:  2007-08-24       Impact factor: 4.942

7.  A relaxed active site after exon ligation by the group I intron.

Authors:  Sarah V Lipchock; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-11       Impact factor: 11.205

8.  Functional identification of ligands for a catalytic metal ion in group I introns.

Authors:  Marcello Forconi; Jihee Lee; Jungjoon K Lee; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2008-06-03       Impact factor: 3.162

9.  pH dependence of self-splicing by the group IA2 intron in a pre-mRNA derived from the nrdB gene of bacteriophage T4.

Authors:  A S Sjögren; R Strömberg; B M Sjöberg
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

10.  Structure and binding of Mg(II) ions and di-metal bridge complexes with biological phosphates and phosphoranes.

Authors:  Evelyn Mayaan; Kevin Range; Darrin M York
Journal:  J Biol Inorg Chem       Date:  2004-08-20       Impact factor: 3.358

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