Literature DB >> 9016543

An update of the DEF database of protein fold class predictions.

M Reczko1, D Karras, H Bohr.   

Abstract

An update is given on the Database of Expected Fold classes (DEF) that contains a collection of fold-class predictions made from protein sequences and a mail server that provides new predictions for new sequences. To any given sequence one of 49 fold-classes is chosen to classify the structure related to the sequence with high accuracy. The updated prediction system is developed using data from the new version of the 3D-ALI database of aligned protein structures and thus is giving more reliable and more detailed predictions than the previous DEF system.

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Year:  1997        PMID: 9016543      PMCID: PMC146378          DOI: 10.1093/nar/25.1.235

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  4 in total

1.  A data bank merging related protein structures and sequences.

Authors:  S Pascarella; P Argos
Journal:  Protein Eng       Date:  1992-03

2.  A new approach to protein fold recognition.

Authors:  D T Jones; W R Taylor; J M Thornton
Journal:  Nature       Date:  1992-07-02       Impact factor: 49.962

3.  Protein structure comparison by alignment of distance matrices.

Authors:  L Holm; C Sander
Journal:  J Mol Biol       Date:  1993-09-05       Impact factor: 5.469

4.  The DEF data base of sequence based protein fold class predictions.

Authors:  M Reczko; H Bohr
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

  4 in total

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