Literature DB >> 9016513

The guide RNA database.

A E Souza1, T Hermann, H U Göringer.   

Abstract

The RNA editing process in protozoan parasites is controlled by small RNA molecules known as guide RNAs (gRNAs). The gRNA database is a comprehensive compilation of published guide RNA sequences from eight different kinetoplastid organisms. In addition to the RNA primary sequences, information on the gene localization, the experimental verification of the transcripts, and literature citations are provided. Accessory information includes the secondary structures of fourTrypanosoma bruceigRNAs as well as a computer modelled three dimensional gRNA structure. The database is made available as a hypertext document accessible via the World Wide Web (WWW) or from the authors in a printed form.

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Year:  1997        PMID: 9016513      PMCID: PMC146412          DOI: 10.1093/nar/25.1.104

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  4 in total

Review 1.  RNA editing in trypanosomes.

Authors:  R Benne
Journal:  Eur J Biochem       Date:  1994-04-01

Review 2.  Mechanism and evolution of RNA editing in kinetoplastida.

Authors:  G J Arts; R Benne
Journal:  Biochim Biophys Acta       Date:  1996-06-03

3.  The secondary structure of guide RNA molecules from Trypanosoma brucei.

Authors:  B Schmid; G R Riley; K Stuart; H U Göringer
Journal:  Nucleic Acids Res       Date:  1995-08-25       Impact factor: 16.971

4.  Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated.

Authors:  G R Riley; R A Corell; K Stuart
Journal:  J Biol Chem       Date:  1994-02-25       Impact factor: 5.157

  4 in total
  5 in total

1.  Evidence for U-tail stabilization of gRNA/mRNA interactions in kinetoplastid RNA editing.

Authors:  Donna J Koslowsky; Larissa Reifur; Laura E Yu; Weiqin Chen
Journal:  RNA Biol       Date:  2004-05-31       Impact factor: 4.652

2.  A three-dimensional working model for a guide RNA from Trypanosoma brucei.

Authors:  T Hermann; B Schmid; H Heumann; H U Göringer
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

3.  Trypanosoma brucei guide RNA poly(U) tail formation is stabilized by cognate mRNA.

Authors:  M T McManus; B K Adler; V W Pollard; S L Hajduk
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

4.  KISS: the kinetoplastid RNA editing sequence search tool.

Authors:  Torsten Ochsenreiter; Michael Cipriano; Stephen L Hajduk
Journal:  RNA       Date:  2006-11-22       Impact factor: 4.942

Review 5.  Evolution of RNA editing in trypanosome mitochondria.

Authors:  L Simpson; O H Thiemann; N J Savill; J D Alfonzo; D A Maslov
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

  5 in total

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