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Literature DB >> 9016503

Genes and proteins of Escherichia coli K-12 (GenProtEC).

Abstract

GenProtEC is a database of Escherichia coli genes and their gene products, classified by type of function and physiological role and with citations to the literature for each. Also present are data on sequence similarities amongE.coliproteins with PAM values, percent identity of amino acids, length of alignment and percent aligned. GenProtEC can also be accessed through the World Wide Web at URL http://mbl.edu/html/ecoli.html .

Entities: Chemical Species

Mesh：

Substances：
Bacterial Proteins

Year: 1997 PMID： 9016503 PMCID： PMC146413 DOI： 10.1093/nar/25.1.51

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

5 in total

1. Exhaustive matching of the entire protein sequence database.

Authors: G H Gonnet; M A Cohen; S A Benner
Journal: Science Date: 1992-06-05 Impact factor: 47.728

2. The SWISS-PROT protein sequence data bank, recent developments.

Authors: A Bairoch; B Boeckmann
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

3. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors: R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal: Science Date: 1995-07-28 Impact factor: 47.728

4. Gene products of Escherichia coli: sequence comparisons and common ancestries.

Authors: B Labedan; M Riley
Journal: Mol Biol Evol Date: 1995-11 Impact factor: 16.240

Review 5. Functions of the gene products of Escherichia coli.

Authors: M Riley
Journal: Microbiol Rev Date: 1993-12

5 in total

7 in total

1. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

Authors: H Ogata; W Fujibuchi; S Goto; M Kanehisa
Journal: Nucleic Acids Res Date: 2000-10-15 Impact factor: 16.971

2. Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC.

Authors: M Kröger; R Wahl
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

3. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays.

Authors: Jonathan A Bernstein; Arkady B Khodursky; Pei-Hsun Lin; Sue Lin-Chao; Stanley N Cohen
Journal: Proc Natl Acad Sci U S A Date: 2002-07-15 Impact factor: 11.205

Genes and proteins of Escherichia coli K-12 (GenProtEC).

1. Exhaustive matching of the entire protein sequence database.

2. The SWISS-PROT protein sequence data bank, recent developments.

3. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

4. Gene products of Escherichia coli: sequence comparisons and common ancestries.

Review 5. Functions of the gene products of Escherichia coli.

1. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

2. Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC.

3. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays.

4. An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants.

5. Global analysis of Escherichia coli RNA degradosome function using DNA microarrays.

6. Design constraints on a synthetic metabolism.

7. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.