Literature DB >> 9016500

The metabolic pathway collection: an update.

E Selkov1, M Galimova, I Goryanin, Y Gretchkin, N Ivanova, Y Komarov, N Maltsev, N Mikhailova, V Nenashev, R Overbeek, E Panyushkina, L Pronevitch, E Selkov1.   

Abstract

The Metabolic Pathway Collection from EMP is an extraction of data from the larger Enzymes and Metabolic Pathways database (EMP). This extraction has been made publicly available in the hope that others will find it useful for a variety of purposes. The original release in October 1995 contained 1814 distinct pathways. The current collection contains 2180. Metabolic reconstructions for the first completely sequenced organisms-Haemophilus influenzae,Mycoplasma genitalium,Saccharomyces cerevisiaeandMethanococcus janaschii-are all included in the current release. All of the pathways in the collections are available as ASCII files in the form generated by the main curator, Evgeni Selkov. In addition, we are offering a more structured encoding of a subset of the collection; our initial release of this subcollection includes all of the pathways inMycoplasma genitalium, and we ultimately intend to offer the entire collection in this form as well.

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Year:  1997        PMID: 9016500      PMCID: PMC146375          DOI: 10.1093/nar/25.1.37

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

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2.  A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

Authors:  H Ogata; W Fujibuchi; S Goto; M Kanehisa
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3.  Computational identification of operons in microbial genomes.

Authors:  Yu Zheng; Joseph D Szustakowski; Lance Fortnow; Richard J Roberts; Simon Kasif
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4.  Blood flows and metabolic components of the cardiome.

Authors:  J B Bassingthwaighte; Z Li; H Qian
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5.  MPW: the Metabolic Pathways Database.

Authors:  E Selkov; Y Grechkin; N Mikhailova; E Selkov
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.

Authors:  P D Karp; M Riley; S M Paley; A Pellegrini-Toole; M Krummenacker
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

7.  Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome.

Authors:  M McClelland; R K Wilson
Journal:  Infect Immun       Date:  1998-09       Impact factor: 3.441

8.  Automation of gene assignments to metabolic pathways using high-throughput expression data.

Authors:  Liviu Popescu; Golan Yona
Journal:  BMC Bioinformatics       Date:  2005-08-31       Impact factor: 3.169

  8 in total

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