Literature DB >> 9016496

The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.

C Harger1, M Skupski, E Allen, C Clark, D Crowley, E Dickinson, D Easley, A Espinosa-Lujan, A Farmer, C Fields, L Flores, L Harris, G Keen, M Manning, M McLeod, J O'Neill, M Pumilia, R Reinert, D Rider, J Rohrlich, Y Romero, J Schwertfeger, G Seluja, A Siepel, P A Schad.   

Abstract

The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. Data contributions, including both original sequence submissions and community annotation, are being accomplished through the use of a graphical client-server interface tool, the GSDB Annotator, and via GIO (GSDB Input/Output) files. Data retrieval services are being provided through a new Web Query Tool and direct SQL. All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community annotation.

Mesh：

Year:  1997        PMID： 9016496      PMCID： PMC146367          DOI： 10.1093/nar/25.1.18

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  4 in total

1.  The phytophthora genome initiative database: informatics and analysis for distributed pathogenomic research.

Authors:  M Waugh; P Hraber; J Weller; Y Wu; G Chen; J Inman; D Kiphart; B Sobral
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Molecular characterization of mitochondrial trifunctional protein deficiency: formation of the enzyme complex is important for stabilization of both alpha- and beta-subunits.

Authors:  S Ushikubo; T Aoyama; T Kamijo; R J Wanders; P Rinaldo; J Vockley; T Hashimoto
Journal:  Am J Hum Genet       Date:  1996-05       Impact factor: 11.025

3.  The Organelle Genome Database Project (GOBASE).

Authors:  M Korab-Laskowska; P Rioux; N Brossard; T G Littlejohn; M W Gray; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  The Genome Sequence DataBase (GSDB): improving data quality and data access.

Authors:  C Harger; M Skupski; J Bingham; A Farmer; S Hoisie; P Hraber; D Kiphart; L Krakowski; M McLeod; J Schwertfeger; G Seluja; A Siepel; G Singh; D Stamper; P Steadman; N Thayer; R Thompson; P Wargo; M Waugh; J J Zhuang; P A Schad
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971
  4 in total

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