Literature DB >> 9009262

The crystal structure of Escherichia coli maltodextrin phosphorylase provides an explanation for the activity without control in this basic archetype of a phosphorylase.

K A Watson1, R Schinzel, D Palm, L N Johnson.   

Abstract

In animals, glycogen phosphorylase (GP) exists in an inactive (T state) and an active (R state) equilibrium that can be altered by allosteric effectors or covalent modification. In Escherichia coli, the activity of maltodextrin phosphorylase (MalP) is controlled by induction at the level of gene expression, and the enzyme exhibits no regulatory properties. We report the crystal structure of E. coli maltodextrin phosphorylase refined to 2.4 A resolution. The molecule consists of a dimer with 796 amino acids per monomer, with 46% sequence identity to the mammalian enzyme. The overall structure of MalP shows a similar fold to GP and the catalytic sites are highly conserved. However, the relative orientation of the two subunits in E. coli MalP is different from both the T and R state GP structures, and there are significant changes at the subunit-subunit interfaces. The sequence changes result in loss of each of the control sites present in rabbit muscle GP. As a result of the changes at the subunit interface, the 280s loop, which in T state GP acts as a gate to control access to the catalytic site, is held in an open conformation in MalP. The open access to the conserved catalytic site provides an explanation for the activity without control in this basic archetype of a phosphorylase.

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Year:  1997        PMID: 9009262      PMCID: PMC1169608          DOI: 10.1093/emboj/16.1.1

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  36 in total

1.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Stereochemical quality of protein structure coordinates.

Authors:  A L Morris; M W MacArthur; E G Hutchinson; J M Thornton
Journal:  Proteins       Date:  1992-04

Review 3.  The role of pyridoxal 5'-phosphate in glycogen phosphorylase catalysis.

Authors:  D Palm; H W Klein; R Schinzel; M Buehner; E J Helmreich
Journal:  Biochemistry       Date:  1990-02-06       Impact factor: 3.162

4.  Is the active form of pyridoxal-P in alpha-glucan phosphorylases a 5'-phosphate dianion?

Authors:  D Palm; K H Schächtele; K Feldmann; E J Helmreich
Journal:  FEBS Lett       Date:  1979-05-15       Impact factor: 4.124

5.  [Maltodextrin phosphorylase of Escherichia coli].

Authors:  M Schwartz; M Hofnung
Journal:  Eur J Biochem       Date:  1967-09

6.  Parallel evolution in two homologues of phosphorylase.

Authors:  V L Rath; R J Fletterick
Journal:  Nat Struct Biol       Date:  1994-10

7.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

8.  Crystallographic binding studies on the allosteric inhibitor glucose-6-phosphate to T state glycogen phosphorylase b.

Authors:  L N Johnson; P Snape; J L Martin; K R Acharya; D Barford; N G Oikonomakos
Journal:  J Mol Biol       Date:  1993-07-05       Impact factor: 5.469

9.  Evolution of allosteric control in glycogen phosphorylase.

Authors:  J W Hudson; G B Golding; M M Crerar
Journal:  J Mol Biol       Date:  1993-12-05       Impact factor: 5.469

10.  The phosphate recognition site of Escherichia coli maltodextrin phosphorylase.

Authors:  R Schinzel; P Drueckes
Journal:  FEBS Lett       Date:  1991-07-29       Impact factor: 4.124

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  21 in total

1.  Mechanism of thermal denaturation of maltodextrin phosphorylase from Escherichia coli.

Authors:  R Griessler; S D'auria; R Schinzel; F Tanfani; B Nidetzky
Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

2.  Cumulative effect of amino acid replacements results in enhanced thermostability of potato type L alpha-glucan phosphorylase.

Authors:  Michiyo Yanase; Hiroki Takata; Kazutoshi Fujii; Takeshi Takaha; Takashi Kuriki
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Role of maltose enzymes in glycogen synthesis by Escherichia coli.

Authors:  Jong-Tae Park; Jae-Hoon Shim; Phuong Lan Tran; In-Hee Hong; Hwan-Ung Yong; Ershita Fitria Oktavina; Hai Dang Nguyen; Jung-Wan Kim; Tae Soo Lee; Sung-Hoon Park; Winfried Boos; Kwan-Hwa Park
Journal:  J Bacteriol       Date:  2011-03-18       Impact factor: 3.490

4.  The α-glucan phosphorylase MalP of Corynebacterium glutamicum is subject to transcriptional regulation and competitive inhibition by ADP-glucose.

Authors:  Lina Clermont; Arthur Macha; Laura M Müller; Sami M Derya; Philipp von Zaluskowski; Alexander Eck; Bernhard J Eikmanns; Gerd M Seibold
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

5.  The maltodextrin system of Escherichia coli: metabolism and transport.

Authors:  Renate Dippel; Winfried Boos
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

6.  The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase.

Authors:  Fang Sheng; Xiaofei Jia; Alejandra Yep; Jack Preiss; James H Geiger
Journal:  J Biol Chem       Date:  2009-02-25       Impact factor: 5.157

7.  Glycogen phosphorylase, the product of the glgP Gene, catalyzes glycogen breakdown by removing glucose units from the nonreducing ends in Escherichia coli.

Authors:  Nora Alonso-Casajús; David Dauvillée; Alejandro Miguel Viale; Francisco José Muñoz; Edurne Baroja-Fernández; María Teresa Morán-Zorzano; Gustavo Eydallin; Steven Ball; Javier Pozueta-Romero
Journal:  J Bacteriol       Date:  2006-07       Impact factor: 3.490

8.  The structure of a glycogen phosphorylase glucopyranose spirohydantoin complex at 1.8 A resolution and 100 K: the role of the water structure and its contribution to binding.

Authors:  M Gregoriou; M E Noble; K A Watson; E F Garman; T M Krulle; C de la Fuente; G W Fleet; N G Oikonomakos; L N Johnson
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

9.  alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering.

Authors:  A Weinhäusel; R Griessler; A Krebs; P Zipper; D Haltrich; K D Kulbe; B Nidetzky
Journal:  Biochem J       Date:  1997-09-15       Impact factor: 3.857

10.  Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme.

Authors:  Mario Mueller; Bernd Nidetzky
Journal:  BMC Biochem       Date:  2010-01-29       Impact factor: 4.059

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