Literature DB >> 9000758

How often do wrong models produce better phylogenies?

Z Yang.   

Abstract

Mesh：

Year:  1997        PMID： 9000758     DOI： 10.1093/oxfordjournals.molbev.a025695

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN： 0737-4038            Impact factor:   16.240


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  17 in total

1.  Complexity of the simplest phylogenetic estimation problem.

Authors:  Z Yang
Journal:  Proc Biol Sci       Date:  2000-01-22       Impact factor: 5.349

2.  Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian trees.

Authors:  Kazuharu Misawa; Masatoshi Nei
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

3.  A new approach for estimating the efficiencies of the nucleotide substitution models.

Authors:  Anup Som
Journal:  Theory Biosci       Date:  2007-01-02       Impact factor: 1.919

4.  Learning to count: robust estimates for labeled distances between molecular sequences.

Authors:  John D O'Brien; Vladimir N Minin; Marc A Suchard
Journal:  Mol Biol Evol       Date:  2009-01-08       Impact factor: 16.240

5.  Phylogenetic estimation in humans and neck riddles.

Authors:  R L Cann
Journal:  Am J Hum Genet       Date:  1997-04       Impact factor: 11.025

6.  Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets.

Authors:  Arong Luo; Huijie Qiao; Yanzhou Zhang; Weifeng Shi; Simon Yw Ho; Weijun Xu; Aibing Zhang; Chaodong Zhu
Journal:  BMC Evol Biol       Date:  2010-08-09       Impact factor: 3.260

7.  The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small.

Authors:  M Nei; S Kumar; K Takahashi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

8.  Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions.

Authors:  Daniel Doerr; Ilan Gronau; Shlomo Moran; Irad Yavneh
Journal:  Algorithms Mol Biol       Date:  2012-08-31       Impact factor: 1.405

9.  ImOSM: intermittent evolution and robustness of phylogenetic methods.

Authors:  Minh Anh Thi Nguyen; Tanja Gesell; Arndt von Haeseler
Journal:  Mol Biol Evol       Date:  2011-09-22       Impact factor: 16.240

10.  Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model.

Authors:  Patrick Kück; Christoph Mayer; Johann-Wolfgang Wägele; Bernhard Misof
Journal:  PLoS One       Date:  2012-05-09       Impact factor: 3.240
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