Literature DB >> 8994634

Molecular motions of a glycopeptide from human serum transferrin studied by 13C nuclear magnetic resonance.

J Lu1, H Van Halbeek.   

Abstract

The molecular motions of a 21-amino-acid glycopeptide (Gp21) containing multiple glycoforms of an N-linked diantennary oligosaccharide were studied by two-dimensional 1H-detected 13C relaxation measurements at natural abundance. Gp21 was derived from human serum transferrin, its amino acid sequence is QQQHLFGSNVTDCSGNFCLFR, and its N-glycan structure is [Formula: see text] The measured longitudinal and transverse relaxation rate constants and the nuclear Overhauser enhancements for the methine carbons of Gp21 were analyzed by using the model-free approach to obtain information about the internal motions in the molecule. The calculated order parameters S2 of the alpha carbons in both NH2- and COOH-terminal segments of the peptide are smaller than those in the interior segment of the Gp21 peptide moiety, implying that the internal motions in the terminal segments are less restricted than in the interior segment. The average S2 value is 0.72-0.91 for the glycosyl residues in the pentasaccharide core of Gp21, 0.58-0.59 for the interior GlcNAc-5,5' residues in the two branches, and 0.35-0.51 for the terminal GlcNAc-5, Gal-6,6', and NeuAcN,N' residues in the two branches, indicating that the internal motions in the glycan core are more restricted than in the two branches.

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Year:  1997        PMID: 8994634      PMCID: PMC1184338          DOI: 10.1016/S0006-3495(97)78688-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Molecular dynamics simulations of a monofucosylated biantennary glycan of the N-acetyllactosamine type: the human lactotransferrin glycan.

Authors:  M Dauchez; J Mazurier; J Montreuil; G Spik; G Vergoten
Journal:  Biochimie       Date:  1992-01       Impact factor: 4.079

2.  Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy.

Authors:  G M Clore; P C Driscoll; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1990-08-14       Impact factor: 3.162

Review 3.  Investigation of protein motions via relaxation measurements.

Authors:  J W Peng; G Wagner
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

4.  Protein surface oligosaccharides and protein function.

Authors:  R J Woods; C J Edge; R A Dwek
Journal:  Nat Struct Biol       Date:  1994-08

5.  A molecular mechanical force field for the conformational analysis of oligosaccharides: comparison of theoretical and crystal structures of Man alpha 1-3Man beta 1-4GlcNAc.

Authors:  S W Homans
Journal:  Biochemistry       Date:  1990-10-02       Impact factor: 3.162

6.  Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

Authors:  G Barbato; M Ikura; L E Kay; R W Pastor; A Bax
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

7.  Characterization of the extent of internal motions in oligosaccharides.

Authors:  T J Rutherford; J Partridge; C T Weller; S W Homans
Journal:  Biochemistry       Date:  1993-11-30       Impact factor: 3.162

8.  Molecular dynamics simulations of asialoglycoprotein receptor ligands.

Authors:  P V Balaji; P K Qasba; V S Rao
Journal:  Biochemistry       Date:  1993-11-30       Impact factor: 3.162

9.  Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis.

Authors:  J P Lommerse; L M Kroon-Batenburg; J Kroon; J P Kamerling; J F Vliegenthart
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

10.  Carbohydrate dynamics at a micellar surface: GD1a headgroup transformations revealed by NMR spectroscopy.

Authors:  L Poppe; H van Halbeek; D Acquotti; S Sonnino
Journal:  Biophys J       Date:  1994-05       Impact factor: 4.033

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  1 in total

1.  Backbone dynamics of a bacterially expressed peptide from the receptor binding domain of Pseudomonas aeruginosa pilin strain PAK from heteronuclear 1H-15N NMR spectroscopy.

Authors:  A P Campbell; L Spyracopoulos; R T Irvin; B D Sykes
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

  1 in total

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