Literature DB >> 8993325

A lysine 73-->histidine variant of yeast iso-1-cytochrome c: evidence for a native-like intermediate in the unfolding pathway and implications for m value effects.

S Godbole1, A Dong, K Garbin, B E Bowler.   

Abstract

In this paper we report thermodynamic studies on a variant of yeast iso-1-cytochrome c in which a surface lysine residue at position 73 has been replaced with a histidine (H73). Guanidine hydrochloride denaturation studies monitored by circular dichroism spectroscopy indicated decreased thermodynamic stability (a lower delta G(o)(u)H20) and a smaller m value for the H73 protein as compared to the wild type (WT) protein. Further investigations to probe the causes for the thermodynamic stability differences between the two proteins involved guanidine hydrochloride and urea denaturations monitored by tryptophan fluorescence. The stability of heme ligation in the denatured state in the presence of either guanidine hydrochloride or urea was monitored by the spin-state transition of the heme iron induced by pH. None of these studies supported the hypothesis that the decreased m value was due to heme-His73 ligation in the denatured state. Guanidine hydrochloride denaturations monitored by the change in the extinction coefficient at 695 nm, which is sensitive to the presence of heme-Met80 ligation, revealed a native-like intermediate for the H73 protein, probably caused by displacement of the Met80 heme ligand by histidine 73 at guanidine hydrochloride concentrations much lower than required for full cooperative unfolding. Presence of the native-like intermediate is most likely the cause of the smaller m value and decreased thermodynamic stability for the CD-monitored H73 protein unfolding as compared to the unfolding of the WT protein. Guanidine hydrochloride denaturations in the presence of 200 mM imidazole provide further evidence in support of the proposed mechanism.

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Year:  1997        PMID: 8993325     DOI: 10.1021/bi961915m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  NMR investigation of ferricytochrome c unfolding: detection of an equilibrium unfolding intermediate and residual structure in the denatured state.

Authors:  B S Russell; R Melenkivitz; K L Bren
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  Estimation of the compaction of the denatured state by a protein variant involved in a reverse hydrophobic effect.

Authors:  Miao-Miao Zhang; Christine D Ford; Bruce E Bowler
Journal:  Protein J       Date:  2004-02       Impact factor: 2.371

3.  Compressing the free energy range of substructure stabilities in iso-1-cytochrome c.

Authors:  Michael G Duncan; Michael D Williams; Bruce E Bowler
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

4.  Naturally Occurring A51V Variant of Human Cytochrome c Destabilizes the Native State and Enhances Peroxidase Activity.

Authors:  Haotian Lei; Bruce E Bowler
Journal:  J Phys Chem B       Date:  2019-10-14       Impact factor: 2.991

5.  The response of Ω-loop D dynamics to truncation of trimethyllysine 72 of yeast iso-1-cytochrome c depends on the nature of loop deformation.

Authors:  Levi J McClelland; Sean M Seagraves; Md Khurshid Alam Khan; Melisa M Cherney; Swati Bandi; Justin E Culbertson; Bruce E Bowler
Journal:  J Biol Inorg Chem       Date:  2015-05-07       Impact factor: 3.358

6.  The magnitude of changes in guanidine-HCl unfolding m-values in the protein, iso-1-cytochrome c, depends upon the substructure containing the mutation.

Authors:  B Hammack; K Attfield; D Clayton; E Dec; A Dong; C Sarisky; B E Bowler
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

7.  Effect of an Ala81His mutation on the Met80 loop dynamics of iso-1-cytochrome c.

Authors:  Swati Bandi; Bruce E Bowler
Journal:  Biochemistry       Date:  2015-02-24       Impact factor: 3.162

8.  Zinc porphyrin: a fluorescent acceptor in studies of Zn-cytochrome c unfolding by fluorescence resonance energy transfer.

Authors:  Amy A Ensign; Iris Jo; Ilyas Yildirim; Todd D Krauss; Kara L Bren
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-31       Impact factor: 11.205

9.  Characterization of N-terminal amino group-heme ligation emerging upon guanidine hydrochloric acid induced unfolding of Hydrogenobacter thermophilus ferricytochrome c552.

Authors:  Hulin Tai; Shin Kawano; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2007-09-22       Impact factor: 3.358

10.  Thermodynamics of loop formation in the denatured state of rhodopseudomonas palustris cytochrome c': scaling exponents and the reconciliation problem.

Authors:  K Sudhindra Rao; Franco O Tzul; Arwen K Christian; Tia N Gordon; Bruce E Bowler
Journal:  J Mol Biol       Date:  2009-08-06       Impact factor: 5.469

  10 in total

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