Literature DB >> 8973214

13C NMR spectroscopic and X-ray crystallographic study of the role played by mitochondrial cytochrome b5 heme propionates in the electrostatic binding to cytochrome c.

M J Rodríguez-Marañón1, F Qiu, R E Stark, S P White, X Zhang, S I Foundling, V Rodríguez, C L Schilling, R A Bunce, M Rivera.   

Abstract

The role played by the outer mitochondrial membrane (OM) cytochrome b5 heme propionate groups in the electrostatic binding between OM cytochrome b5 and horse heart cytochrome c was investigated by 13C NMR spectroscopy and X-ray crystallography. To achieve these aims, 13C-labeled heme OM cytochrome b5 was expressed in Escherichia coli as previously described [Rivera M., Walker, F.A. (1995) Anal. Biochem. 230, 295-302]. Assignment of the resonances arising from the heme propionate carbons in ferricytochrome b5 was carried out by a combination of one- and two-dimensional NMR experiments. Titrations of [13C]heme-labeled OM cytochrome b5 with horse heart cytochrome c were carried out in order to monitor the resonances arising from the heme propionate carbonyl carbons in OM cytochrome b5. The results from these titrations clearly show that only the heme propionate located on the exposed heme edge in OM cytochrome b5 participates in the electrostatic stabilization of the complex between OM cytochrome b5 and horse heart cytochrome c. Similar experiments carried out monitoring 13C resonances arising from several other heme substituents demonstrated that the stoichiometry of the complex is 1:1. A conditional binding constant, K which equals 3.8 x 10(4) +/- 1.4 x 10(4) at mu = 0.02 M, was obtained for the formation of the complex by fitting the binding curves obtained experimentally to a model based on this stoichiometry. The X-ray crystal structure of rat liver OM cytochrome b5 solved to 2.7 A resolution shows that the structures of bovine liver microsomal cytochrome b5 and rat liver OM cytochrome b5 are almost identical when compared at medium resolution. The similarity between the two structures, combined with the findings that only the heme propionate located on the exposed heme edge of OM cytochrome b5 participates in the electrostatic binding to cytochrome c and that the stability of this complex is similar to that measured for the association between microsomal cytochrome b5 and cytochrome c, clearly indicates that the site of interaction on OM cytochrome b5 is almost identical to the one elucidated for microsomal cytochrome b5. It is therefore possible to conclude that the large body of information gathered by many investigators for the nonphysiological interaction between microsomal cytochrome b5 and cytochrome c (recently reviewed) [Mauk, A. G. Mauk, M. R., Moore, G. R., & Northrup, S. H. (1995) Bioenerg. Biomembr. 27, 311-330] has indeed biological as well as pedagogical validity.

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Year:  1996        PMID: 8973214     DOI: 10.1021/bi961895o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  A further investigation of the cytochrome b5-cytochrome c complex.

Authors:  Lucia Banci; Ivano Bertini; Isabella C Felli; Ludwig Krippahl; Karel Kubicek; José J G Moura; Antonio Rosato
Journal:  J Biol Inorg Chem       Date:  2003-07-19       Impact factor: 3.358

2.  Study of the individual cytochrome b5 and cytochrome b5 reductase domains of Ncb5or reveals a unique heme pocket and a possible role of the CS domain.

Authors:  Bin Deng; Sudharsan Parthasarathy; WenFang Wang; Brian R Gibney; Kevin P Battaile; Scott Lovell; David R Benson; Hao Zhu
Journal:  J Biol Chem       Date:  2010-07-14       Impact factor: 5.157

3.  Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold.

Authors:  Jikui Song; Dmitriy Vinarov; Ejan M Tyler; Mark N Shahan; Robert C Tyler; John L Markley
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

4.  Effects of charged amino-acid mutation on the solution structure of cytochrome b(5) and binding between cytochrome b(5) and cytochrome c.

Authors:  C Qian; Y Yao; K Ye; J Wang; W Tang; Y Wang; W Wang; J Lu; Y Xie; Z Huang
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

Review 5.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

6.  Accommodating a nonconservative internal mutation by water-mediated hydrogen bonding between β-sheet strands: a comparison of human and rat type B (mitochondrial) cytochrome b5.

Authors:  Sudharsan Parthasarathy; Adriana Altuve; Simon Terzyan; Xuejun Zhang; Krzysztof Kuczera; Mario Rivera; David R Benson
Journal:  Biochemistry       Date:  2011-05-26       Impact factor: 3.162

7.  Temporal and spatial gene expression of cytochrome B5 during flower and fruit development in olives.

Authors:  A I Martsinkovskaya; Z P Poghosyan; K Haralampidis; D J Murphy; P Hatzopoulos
Journal:  Plant Mol Biol       Date:  1999-05       Impact factor: 4.076

8.  Structural, NMR spectroscopic, and computational investigation of hemin loading in the hemophore HasAp from Pseudomonas aeruginosa.

Authors:  Grace Jepkorir; Juan Carlos Rodríguez; Huan Rui; Wonpil Im; Scott Lovell; Kevin P Battaile; Aileen Y Alontaga; Erik T Yukl; Pierre Moënne-Loccoz; Mario Rivera
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

9.  Unique structure of Ascaris suum b5-type cytochrome: an additional alpha-helix and positively charged residues on the surface domain interact with redox partners.

Authors:  Takehiro Yokota; Yoshitaka Nakajima; Fumiyuki Yamakura; Shigetoshi Sugio; Muneaki Hashimoto; Shinzaburo Takamiya
Journal:  Biochem J       Date:  2006-03-01       Impact factor: 3.857

10.  Characterization and calculation of a cytochrome c-cytochrome b5 complex using NMR data.

Authors:  Shashank Deep; Sang-Choul Im; Erik R P Zuiderweg; Lucy Waskell
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

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