Literature DB >> 8968621

New evidence that the hydrophobic effect and dispersion are not major driving forces for nucleotide base stacking.

S H Gellman, T S Haque, L F Newcomb.   

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Year:  1996        PMID： 8968621      PMCID： PMC1233839          DOI： 10.1016/S0006-3495(96)79547-4

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  8 in total

1.  Origin of DNA helical structure and its sequence dependence.

Authors:  A Sarai; J Mazur; R Nussinov; R L Jernigan
Journal:  Biochemistry       Date:  1988-11-01       Impact factor: 3.162

2.  Base stacking and molecular polarizability: effect of a methyl group in the 5-position of pyrimidines.

Authors:  L C Sowers; B R Shaw; W D Sedwick
Journal:  Biochem Biophys Res Commun       Date:  1987-10-29       Impact factor: 3.575

3.  Thermodynamic studies of a model system for hydrophobic bonding.

Authors:  D M Crothers; D I Ratner
Journal:  Biochemistry       Date:  1968-05       Impact factor: 3.162

4.  Stereochemistry of nucleic acids and their constituents. X. Solid-state base-stacking patterns in nucleic acid constituents and polynucleotides.

Authors:  C E Bugg; J M Thomas; M Sundaralingam; S T Rao
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

5.  A free energy analysis of nucleic acid base stacking in aqueous solution.

Authors:  R A Friedman; B Honig
Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

6.  Solvent effects on thermodynamics of double-helix formation in (dG-dC)3.

Authors:  D D Albergo; D H Turner
Journal:  Biochemistry       Date:  1981-03-17       Impact factor: 3.162

7.  The importance of London dispersion forces in the maintenance of the deoxyribonucleic acid helix.

Authors:  S Hanlon
Journal:  Biochem Biophys Res Commun       Date:  1966-06-21       Impact factor: 3.575

8.  Stacking properties of a highly hydrophobic dinucleotide sequence, N6, N6-dimethyladenylyl(3' leads to 5')N6, N6-dimethyladenosine, occurring in 16--18-S ribosomal RNA.

Authors:  I Tazawa; T Koike; Y Inoue
Journal:  Eur J Biochem       Date:  1980-08
  8 in total
  7 in total

1.  Thermodynamic parameters for DNA sequences with dangling ends.

Authors:  S Bommarito; N Peyret; J SantaLucia
Journal:  Nucleic Acids Res       Date:  2000-05-01       Impact factor: 16.971

2.  Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.

Authors:  Kevin M Guckian; Barbara A Schweitzer; Rex X-F Ren; Charles J Sheils; Deborah C Tahmassebi; Eric T Kool
Journal:  J Am Chem Soc       Date:  2000-02-10       Impact factor: 15.419

3.  Structural specificity conferred by a group I RNA peripheral element.

Authors:  Travis H Johnson; Pilar Tijerina; Amanda B Chadee; Daniel Herschlag; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-11       Impact factor: 11.205

4.  Predicting helical coaxial stacking in RNA multibranch loops.

Authors:  Rahul Tyagi; David H Mathews
Journal:  RNA       Date:  2007-05-16       Impact factor: 4.942

5.  The physical basis of nucleic acid base stacking in water.

Authors:  R Luo; H S Gilson; M J Potter; M K Gilson
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

6.  Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips.

Authors:  V A Vasiliskov; D V Prokopenko; A D Mirzabekov
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

7.  "End-to-end" stacking of small dsRNA.

Authors:  Nicole Erlenbach; Christian Grünewald; Bisera Krstic; Alexander Heckel; Thomas F Prisner
Journal:  RNA       Date:  2018-11-07       Impact factor: 4.942
  7 in total

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