Literature DB >> 8967095

[3-dimensional reconstruction of histological serial sections using a computer].

W J Weninger1, J Streicher, G B Müller.   

Abstract

This paper reports the development of an objective and time-saving method for the three-dimensional reconstruction of sectioned morphological specimens on the computer. The development of a fiducial marker technique, the design of program extensions for the automatic thresholding and realignment of images, and a technique for the transfer of marker-derived reference points into images of higher magnification are described. The method is based on the use of resin as embedding material and drill holes as fiducials. Images are digitized by a video camera, and NIH-Image is used for image processing. Special macros were written for the automation of a number of operations, such as object and marker segmentation, image reorientation, image scaling, dirt removal, and marker transfer. The so-treated image series were transferred to a workstation and were reconstructed using "Image Volumes". The reconstructs obtained from this largely automated technique exhibit a perfect alignment of the sections. The 3-D representations of the sectioned objects have a much higher degree of objectivity than those obtained by manual image orientation or by semiautomated techniques that do not use fiducials.

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Mesh:

Year:  1996        PMID: 8967095

Source DB:  PubMed          Journal:  Wien Klin Wochenschr        ISSN: 0043-5325            Impact factor:   1.704


  5 in total

1.  Episcopic 3D Imaging Methods: Tools for Researching Gene Function.

Authors:  Wolfgang J Weninger; Stefan H Geyer
Journal:  Curr Genomics       Date:  2008-06       Impact factor: 2.236

2.  microMRI-HREM pipeline for high-throughput, high-resolution phenotyping of murine embryos.

Authors:  Guido Pieles; Stefan H Geyer; Dorota Szumska; Jürgen Schneider; Stefan Neubauer; Kieran Clarke; Karl Dorfmeister; Angela Franklyn; Steve D Brown; Shoumo Bhattacharya; Wolfgang J Weninger
Journal:  J Anat       Date:  2007-05-28       Impact factor: 2.610

Review 3.  Imaging heart development using high-resolution episcopic microscopy.

Authors:  Timothy J Mohun; Wolfgang J Weninger
Journal:  Curr Opin Genet Dev       Date:  2011-09-04       Impact factor: 5.578

4.  An enhanced staining method K-B-2R staining for three-dimensional nerve reconstruction.

Authors:  Peng Luo; Jianghui Dong; Jian Qi; Yi Zhang; Xiaolin Liu; Yingchun Zhong; Cory J Xian; Liping Wang
Journal:  BMC Neurosci       Date:  2019-07-08       Impact factor: 3.288

5.  Three-dimensional architecture of human diabetic peripheral nerves revealed by X-ray phase contrast holographic nanotomography.

Authors:  Lars B Dahlin; Kristian R Rix; Vedrana A Dahl; Anders B Dahl; Janus N Jensen; Peter Cloetens; Alexandra Pacureanu; Simin Mohseni; Niels O B Thomsen; Martin Bech
Journal:  Sci Rep       Date:  2020-05-05       Impact factor: 4.379

  5 in total

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