Literature DB >> 896473

A program for least squares analysis of reassociation and hybridization data.

W R Pearson, E H Davidson, R J Britten.   

Abstract

A computer program is described for the rapid calculation of least squares solutions for data fitted to different functions normally used in reassociation and hybridization kinetic measurements. The equations for the fraction not reacted as a function of Cot follow: First order, exp(-kCot); second order, (1+kCot)-1; variable order, (1+kCot)-n; approximate fraction of DNA sequence remaining single stranded, (1+kCot)-.44; and a function describing the pairing of tracer when the rate constant for the tracer (k) is distinct from the driver rate constant (kd): (formula: see text). Several components may be used for most of these functional forms. The standard deviations of the individual parameters at the solutions are calculated.

Entities:  

Mesh:

Substances:

Year:  1977        PMID: 896473      PMCID: PMC342517          DOI: 10.1093/nar/4.6.1727

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  Studies on nucleic acid reassociation kinetics: reactivity of single-stranded tails in DNA-DNA renaturation.

Authors:  M J Smith; R J Britten; E H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

2.  Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation.

Authors:  R J Britten; E H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  1976-02       Impact factor: 11.205

3.  Structural genes adjacent to interspersed repetitive DNA sequences.

Authors:  E H Davidson; B R Hough; W H Klein; R J Britten
Journal:  Cell       Date:  1975-03       Impact factor: 41.582

4.  Comparative aspects of DNA organization in Metazoa.

Authors:  E H Davidson; G A Galau; R C Angerer; R J Britten
Journal:  Chromosoma       Date:  1975-07-21       Impact factor: 4.316

5.  Structural gene sets active in embryos and adult tissues of the sea urchin.

Authors:  G A Galau; W H Klein; M M Davis; B J Wold; R J Britten; E H Davidson
Journal:  Cell       Date:  1976-04       Impact factor: 41.582

Review 6.  Organization, transcription, and regulation in the animal genome.

Authors:  E H Davidson; R J Britten
Journal:  Q Rev Biol       Date:  1973-12       Impact factor: 4.875

7.  A measurement of the sequence complexity of polysomal messenger RNA in sea urchin embryos.

Authors:  G A Galau; R J Britten; E H Davidson
Journal:  Cell       Date:  1974-05       Impact factor: 41.582

8.  Three abundance classes in HeLa cell messenger RNA.

Authors:  J O Bishop; J G Morton; M Rosbash; M Richardson
Journal:  Nature       Date:  1974-07-19       Impact factor: 49.962

9.  Kinetics of renaturation of DNA.

Authors:  J G Wetmur; N Davidson
Journal:  J Mol Biol       Date:  1968-02-14       Impact factor: 5.469

10.  Complexity of cytoplasmic RNA in different mouse tissues measured by hybridization of polyadenylated RNA to complementary DNA.

Authors:  G U Ryffel; B J McCarthy
Journal:  Biochemistry       Date:  1975-04-08       Impact factor: 3.162

  10 in total
  52 in total

1.  Genome size evolution in pufferfish: a comparative analysis of diodontid and tetraodontid pufferfish genomes.

Authors:  Daniel E Neafsey; Stephen R Palumbi
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

2.  Different Temporal and Spatial Gene Expression Patterns Occur during Anther Development.

Authors:  A. M. Koltunow; J. Truettner; K. H. Cox; M. Wallroth; R. B. Goldberg
Journal:  Plant Cell       Date:  1990-12       Impact factor: 11.277

3.  Specific cell-cell contacts are essential for induction of gene expression during differentiation of Dictyostelium discoideum.

Authors:  D D Blumberg; J P Margolskee; E Barklis; S N Chung; N S Cohen; H F Lodish
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

4.  Kinetic determination of the genome size of the pea.

Authors:  W R Pearson; S L Smith; J R Wu; J Bonner
Journal:  Plant Physiol       Date:  1978-07       Impact factor: 8.340

5.  Repeat sequence interspersion in coding DNA of peas does not reflect that in total pea DNA.

Authors:  M G Murray; W F Thompson
Journal:  Plant Mol Biol       Date:  1982-06       Impact factor: 4.076

6.  Developmental biochemistry of cottonseed embryogenesis and germination : XVII. Developmental expression of genes for the principal storage proteins.

Authors:  L Dure; J B Pyle; C A Chlan; J C Baker; G A Galau
Journal:  Plant Mol Biol       Date:  1983-07       Impact factor: 4.076

7.  Genome size, complexity, and ploidy of the pathogenic fungus Histoplasma capsulatum.

Authors:  J Carr; G Shearer
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

8.  Physical characterization of mitochondrial DNA from cotton.

Authors:  C L Hsu; B C Mullin
Journal:  Plant Mol Biol       Date:  1989-10       Impact factor: 4.076

9.  Isolation of discrete repetitive sequence classes from Xenopus DNA by high temperature reassociation.

Authors:  B A Braun; K E Schanke; D E Graham
Journal:  Nucleic Acids Res       Date:  1978-11       Impact factor: 16.971

10.  Evolutionary sequence divergence within repeated DNA families of higher plant genomes. I. Analysis of reassociation kinetics.

Authors:  R S Preisler; W F Thompson
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.