Literature DB >> 8944169

Extending double modulation: combinatorial rules for identifying the modulations necessary for determining elasticities in metabolic pathways.

C Giersch1, A Cornish-Bowden.   

Abstract

The double modulation method for determining the elasticities of pathway enzymes, originally devised by Kacser & Burns (Biochem. Soc. Trans. 7, 1149-1160, 1979), is extended to pathways of complex topological structure, including branching and feedback loops. An explicit system of linear equations for the unknown elasticities is derived. The constraints imposed on this linear system imply that modulations of more than one enzyme are not necessarily independent. Simple combinatorial rules are described for identifying without using any algebra the set of independent modulations that allow the determination of the elasticities of any enzyme. By repeated application, the minimum numbers of modulations required to determine the elasticities of all enzymes of a given pathway can be determined. The procedure is illustrated with numerous examples.

Mesh:

Year:  1996        PMID: 8944169     DOI: 10.1006/jtbi.1996.0175

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  3 in total

1.  Control analysis of DNA microarray expression data.

Authors:  R Keira Curtis; Martin D Brand
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

2.  Generalization of the double-modulation method for in situ determination of elasticities.

Authors:  L Acerenza; A Cornish-Bowden
Journal:  Biochem J       Date:  1997-10-01       Impact factor: 3.857

3.  A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics.

Authors:  I Emrah Nikerel; Wouter A van Winden; Walter M van Gulik; Joseph J Heijnen
Journal:  BMC Bioinformatics       Date:  2006-12-21       Impact factor: 3.169

  3 in total

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