Literature DB >> 8944158

On the sign pattern of metabolic control coefficients.

A K Sen1.   

Abstract

The sign of a flux (concentration) control coefficient of an enzyme determines if the metabolic flux (metabolite concentration) will increase or decrease when the enzyme concentration is increased/decreased. In general, the sign of a control coefficient depends on the magnitudes of the enzyme elasticities, fluxes etc. It is shown that in many pathways some (or all) of the control coefficients may have fixed signs irrespective of the magnitudes of the elasticities and fluxes. The remaining control coefficients are sign-indeterminate. The enzymes and metabolites whose control coefficients are sign-indeterminate can be identified in a heuristic fashion directly from the topology of the metabolic pathway, i.e., location of feedback-feedforward loops, location of branches, presence of isoenzymes etc. In other pathways such as those containing a substrate cycle, none of the control coefficients of the enzymes can have a fixed sign; a control coefficient may be positive, negative or zero depending on the actual magnitudes of the elasticities and velocities.

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Year:  1996        PMID: 8944158     DOI: 10.1006/jtbi.1996.0164

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  2 in total

1.  Simplified modelling of metabolic pathways for flux prediction and optimization: lessons from an in vitro reconstruction of the upper part of glycolysis.

Authors:  Julie B Fiévet; Christine Dillmann; Gilles Curien; Dominique de Vienne
Journal:  Biochem J       Date:  2006-06-01       Impact factor: 3.857

2.  The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.

Authors:  Valentina Baldazzi; Delphine Ropers; Yves Markowicz; Daniel Kahn; Johannes Geiselmann; Hidde de Jong
Journal:  PLoS Comput Biol       Date:  2010-06-10       Impact factor: 4.475

  2 in total

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