Literature DB >> 8932388

Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome III.

F Quigley1, P Dao, A Cottet, R Mache.   

Abstract

The nucleotide sequence of a 81 493 bp contig from Arabidopsis thaliana chromosome III has been determined together with 11 corresponding cognate cDNAs. Analysis of the finished sequence and comparison with public databases indicates a gene density of one gene per 4527 bp and identifies 17 novel genes, 10 of which are totally unknown or have no well-defined function. In addition, the contig contains part of a non-LTR retrotransposon and large direct and inverted repeats. Contig analysis also provides information on the structure and genomic organization of plant genes.

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Year:  1996        PMID： 8932388      PMCID： PMC146221          DOI： 10.1093/nar/24.21.4313

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  15 in total

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Authors:  U Lagercrantz; H Ellegren; L Andersson
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Journal:  Plant Mol Biol       Date:  1993-04       Impact factor: 4.076

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Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
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4.  Cleaning the GenBank Arabidopsis thaliana data set.

Authors:  P G Korning; S M Hebsgaard; P Rouze; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-01-15       Impact factor: 16.971

5.  Multicopy GTPase center protein L12 of Arabidopsis chloroplast ribosome is encoded by a clustered nuclear gene family with the expressed members closely linked to tRNA(Pro) genes.

Authors:  W Weglöhner; A R Subramanian
Journal:  J Biol Chem       Date:  1994-03-11       Impact factor: 5.157

6.  Two newly isolated genes from citrus exhibit a different pattern of diurnal expression and light response.

Authors:  M A Abied; D Holland
Journal:  Plant Mol Biol       Date:  1994-10       Impact factor: 4.076

7.  Gene density and organization in a small region of the Arabidopsis thaliana genome.

Authors:  L Le Guen; M Thomas; M Kreis
Journal:  Mol Gen Genet       Date:  1994-11-01

8.  Evidence for a chimeric nature of nuclear genomes: eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes.

Authors:  W Martin; H Brinkmann; C Savonna; R Cerff
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-15       Impact factor: 11.205

9.  Characterization of cis-acting elements in light regulation of the nuclear gene encoding the A subunit of chloroplast isozymes of glyceraldehyde-3-phosphate dehydrogenase from Arabidopsis thaliana.

Authors:  T R Conley; S C Park; H B Kwon; H P Peng; M C Shih
Journal:  Mol Cell Biol       Date:  1994-04       Impact factor: 4.272

10.  2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans.

Authors:  R Wilson; R Ainscough; K Anderson; C Baynes; M Berks; J Bonfield; J Burton; M Connell; T Copsey; J Cooper
Journal:  Nature       Date:  1994-03-03       Impact factor: 49.962
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  9 in total

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Authors:  P Daram; S Brunner; C Rausch; C Steiner; N Amrhein; M Bucher
Journal:  Plant Cell       Date:  1999-11       Impact factor: 11.277

2.  A new Ac-like transposon of Arabidopsis is associated with a deletion of the RPS5 disease resistance gene.

Authors:  A D Henk; R F Warren; R W Innes
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

3.  Objective: The Complete Sequence of a Plant Genome.

Authors:  M. Bevan
Journal:  Plant Cell       Date:  1997-04       Impact factor: 11.277

4.  A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome.

Authors:  R Panstruga; R Büschges; P Piffanelli; P Schulze-Lefert
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

5.  Fine sequence analysis of 60 kb around the Arabidopsis thaliana AtEm1 locus on chromosome III.

Authors:  P Comella; H J Wu; M Laudie; C Berger; R Cooke; M Delseny; F Grellet
Journal:  Plant Mol Biol       Date:  1999-11       Impact factor: 4.076

6.  In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.

Authors:  S Aubourg; N Boudet; M Kreis; A Lecharny
Journal:  Plant Mol Biol       Date:  2000-03       Impact factor: 4.076

7.  A chloroplast phosphate transporter, PHT2;1, influences allocation of phosphate within the plant and phosphate-starvation responses.

Authors:  Wayne K Versaw; Maria J Harrison
Journal:  Plant Cell       Date:  2002-08       Impact factor: 11.277

8.  Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants.

Authors:  A Barakat; G Matassi; G Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

9.  LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis.

Authors:  Chao Yang; Hongtao Hu; Hongyan Ren; Yuzhu Kong; Hongwei Lin; Jiangfan Guo; Lingling Wang; Yi He; Xiaomeng Ding; Magda Grabsztunowicz; Paula Mulo; Tao Chen; Yu Liu; Zhongchang Wu; Yunrong Wu; Chuanzao Mao; Ping Wu; Xiaorong Mo
Journal:  Plant Cell       Date:  2016-03-03       Impact factor: 11.277
  9 in total

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