Literature DB >> 8916226

How many fold types of protein are there in nature?

Z X Wang1.   

Abstract

Many protein structures have now been determined and reveal that protein molecules can adopt the same fold despite having very different sequences. It has been suggested that, owing to different stereochemical constraints, the number of ways that a sequence can fold may be limited. Therefore, it is reasonable to ask how many fold types exist in nature. Several groups have tackled this problem with very different results. In the present study, a novel statistical sampling approach is used to reestimate this number. The results suggest that the number of protein folds in nature is probably several hundreds.

Mesh:

Year:  1996        PMID: 8916226     DOI: 10.1002/(SICI)1097-0134(199610)26:2<186::AID-PROT8>3.0.CO;2-E

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  7 in total

1.  Designability of alpha-helical proteins.

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2.  Statistical significance of threading scores.

Authors:  Afshin Fayyaz Movaghar; Guillaume Launay; Sophie Schbath; Jean-François Gibrat; François Rodolphe
Journal:  J Comput Biol       Date:  2011-12-09       Impact factor: 1.479

Review 3.  Protein folds and protein folding.

Authors:  R Dustin Schaeffer; Valerie Daggett
Journal:  Protein Eng Des Sel       Date:  2010-11-03       Impact factor: 1.650

4.  Seeking an ancient enzyme in Methanococcus jannaschii using ORF, a program based on predicted secondary structure comparisons.

Authors:  R Aurora; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

Review 5.  Structural motifs at protein-protein interfaces: protein cores versus two-state and three-state model complexes.

Authors:  C J Tsai; D Xu; R Nussinov
Journal:  Protein Sci       Date:  1997-09       Impact factor: 6.725

6.  Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds.

Authors:  Ruslan I Sadreyev; Nick V Grishin
Journal:  BMC Struct Biol       Date:  2006-03-20

7.  Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.

Authors:  Dan Bolser; Panos Dafas; Richard Harrington; Jong Park; Michael Schroeder
Journal:  BMC Bioinformatics       Date:  2003-10-08       Impact factor: 3.169

  7 in total

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