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Literature DB >> 8909140

Go hunting in sequence databases but watch out for the traps.

P Bork¹, A Bairoch.

Abstract

Mesh：

Substances：
Proteins

Year: 1996 PMID： 8909140 DOI： 10.1016/0168-9525(96)60040-7

Source DB: PubMed Journal: Trends Genet ISSN： 0168-9525 Impact factor: 11.639

Keyword Cloud
Cited

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24 in total

1. Dictionary-driven protein annotation.

Authors: Isidore Rigoutsos; Tien Huynh; Aris Floratos; Laxmi Parida; Daniel Platt
Journal: Nucleic Acids Res Date: 2002-09-01 Impact factor: 16.971

2. Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species.

Authors: Amr M Mohamed; Dan J Kuyper; Peter C Iwen; Hesham H Ali; Dhundy R Bastola; Steven H Hinrichs
Journal: J Clin Microbiol Date: 2005-08 Impact factor: 5.948

3. Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis.

Authors: Kimberly J Nelson; Stacy T Knutson; Laura Soito; Chananat Klomsiri; Leslie B Poole; Jacquelyn S Fetrow
Journal: Proteins Date: 2010-12-22

4. Robust recognition of zinc binding sites in proteins.

Authors: Jessica C Ebert; Russ B Altman
Journal: Protein Sci Date: 2007-11-27 Impact factor: 6.725

5. The Genome Sequence DataBase (GSDB): improving data quality and data access.

Authors: C Harger; M Skupski; J Bingham; A Farmer; S Hoisie; P Hraber; D Kiphart; L Krakowski; M McLeod; J Schwertfeger; G Seluja; A Siepel; G Singh; D Stamper; P Steadman; N Thayer; R Thompson; P Wargo; M Waugh; J J Zhuang; P A Schad
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

Go hunting in sequence databases but watch out for the traps.

1. Dictionary-driven protein annotation.

2. Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species.

3. Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis.

4. Robust recognition of zinc binding sites in proteins.

5. The Genome Sequence DataBase (GSDB): improving data quality and data access.

6. Identification of nontuberculous mycobacteria using multilocous sequence analysis of 16S rRNA, hsp65, and rpoB.

7. Seq2Ref: a web server to facilitate functional interpretation.

8. AntiFam: a tool to help identify spurious ORFs in protein annotation.

9. MaGe: a microbial genome annotation system supported by synteny results.

10. An optimized procedure greatly improves EST vector contamination removal.