Literature DB >> 8901549

A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme.

N C Gassner1, W A Baase, B W Matthews.   

Abstract

To test whether the structure of a protein is determined in a manner akin to the assembly of a jigsaw puzzle, up to 10 adjacent residues within the core of T4 lysozyme were replaced by methionine. Such variants are active and fold cooperatively with progressively reduced stability. The structure of a seven-methionine variant has been shown, crystallographically, to be similar to wild type and to maintain a well ordered core. The interaction between the core residues is, therefore, not strictly comparable with the precise spatial complementarity of the pieces of a jigsaw puzzle. Rather, a certain amount of give and take in forming the core structure is permitted. A simplified hydrophobic core sequence, imposed without genetic selection or computer-based design, is sufficient to retain native properties in a globular protein.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8901549      PMCID: PMC37959          DOI: 10.1073/pnas.93.22.12155

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  The protein-folding problem: the native fold determines packing, but does packing determine the native fold?

Authors:  M J Behe; E E Lattman; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

2.  The role of internal packing interactions in determining the structure and stability of a protein.

Authors:  W A Lim; R T Sauer
Journal:  J Mol Biol       Date:  1991-05-20       Impact factor: 5.469

3.  Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities.

Authors:  T P Creamer; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

4.  Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease.

Authors:  D Shortle; W E Stites; A K Meeker
Journal:  Biochemistry       Date:  1990-09-04       Impact factor: 3.162

Review 5.  Determination of macromolecular structures from anomalous diffraction of synchrotron radiation.

Authors:  W A Hendrickson
Journal:  Science       Date:  1991-10-04       Impact factor: 47.728

6.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

7.  Contribution of hydrophobic interactions to protein stability.

Authors:  J T Kellis; K Nyberg; D Sali; A R Fersht
Journal:  Nature       Date:  1988-06-23       Impact factor: 49.962

8.  Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect.

Authors:  A E Eriksson; W A Baase; X J Zhang; D W Heinz; M Blaber; E P Baldwin; B W Matthews
Journal:  Science       Date:  1992-01-10       Impact factor: 47.728

9.  Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences.

Authors:  A E Eriksson; W A Baase; B W Matthews
Journal:  J Mol Biol       Date:  1993-02-05       Impact factor: 5.469

10.  Second-site revertants of an inactive T4 lysozyme mutant restore activity by restructuring the active site cleft.

Authors:  A R Poteete; D P Sun; H Nicholson; B W Matthews
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

View more
  43 in total

1.  Exploring steric constraints on protein mutations using MAGE/PROBE.

Authors:  J M Word; R C Bateman; B K Presley; S C Lovell; D C Richardson
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

Review 2.  The hydrogen exchange core and protein folding.

Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

3.  Reverse engineering the (beta/alpha )8 barrel fold.

Authors:  J A Silverman; R Balakrishnan; P B Harbury
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

Review 4.  Breaking open a protein barrel.

Authors:  N Kallenbach
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

Review 5.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

6.  Structure and stability effects of mutations designed to increase the primary sequence symmetry within the core region of a beta-trefoil.

Authors:  S R Brych; S I Blaber; T M Logan; M Blaber
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

7.  Stably folded de novo proteins from a designed combinatorial library.

Authors:  Yinan Wei; Tun Liu; Stephen L Sazinsky; David A Moffet; István Pelczer; Michael H Hecht
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

Review 8.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

9.  Structural and kinetic characterization of the simplified SH3 domain FP1.

Authors:  Qian Yi; Ponni Rajagopal; Rachel E Klevit; David Baker
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

Review 10.  De novo proteins from designed combinatorial libraries.

Authors:  Michael H Hecht; Aditi Das; Abigail Go; Luke H Bradley; Yinan Wei
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.