Literature DB >> 8889823

Functionally important residues of aromatic L-amino acid decarboxylase probed by sequence alignment and site-directed mutagenesis.

S Ishii1, H Mizuguchi, J Nishino, H Hayashi, H Kagamiyama.   

Abstract

To identify functional residues of rat liver L-aromatic amino acid decarboxylase (AADC), we aligned the sequences of 13 group II amino acid decarboxylases and performed mutational analysis on the residues that were invariant or conservatively substituted. Replacements of His192, Asp252, Asp271, Ser296, Lys303, Tyr332, and Arg355 with alanine residues decreased the AADC activity (kcat/K(m)) by more than 10(4)-fold. Conservative replacements of [Asp252-->Glu], [Lys303-->Arg], and [Tyr332-->Phe] also resulted in decreases in activity by more than 10(4)-fold, indicating that both the chemical properties and the shape of these residues are essential for catalysis. The presence of a Schiff base between the amino group of Lys303 and the coenzyme pyridoxal 5'-phosphate is important for catalysis, probably at the transaldimination step. The enzyme activity was essentially unaffected by conservative mutation of [Arg355-->Lys], showing that the presence of a basic group at position 355 is necessary and sufficient for the catalysis. Replacement of [Thr246-->Ala], [His269-->Ala], and [Trp363-->Leu] yielded mutant enzymes that were 1-8% as active as the wild-type enzyme; these residues are not essential for the catalysis but are considered to contribute to the activity through conformational or other effects. The roles of the catalytically important residues of the group II amino acid decarboxylases probed in this study were discussed in the light of their relationship with the residues of other pyridoxal enzymes.

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Year:  1996        PMID: 8889823     DOI: 10.1093/oxfordjournals.jbchem.a021422

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  11 in total

1.  Mutation of cysteine 111 in Dopa decarboxylase leads to active site perturbation.

Authors:  P Dominici; P S Moore; S Castellani; M Bertoldi; C B Voltattorni
Journal:  Protein Sci       Date:  1997-09       Impact factor: 6.725

2.  Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.

Authors:  Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Journal:  EMBO J       Date:  2005-03-24       Impact factor: 11.598

3.  Aromatic L-amino acid decarboxylase: conformational change in the flexible region around Arg334 is required during the transaldimination process.

Authors:  S Ishii; H Hayashi; A Okamoto; H Kagamiyama
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

4.  Structural study reveals that Ser-354 determines substrate specificity on human histidine decarboxylase.

Authors:  Hirofumi Komori; Yoko Nitta; Hiroshi Ueno; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2012-07-05       Impact factor: 5.157

Review 5.  Aromatic L-amino acid decarboxylases: mechanistic features and microbial applications.

Authors:  Sang-Woo Han; Jong-Shik Shin
Journal:  Appl Microbiol Biotechnol       Date:  2022-06-28       Impact factor: 4.813

6.  Characterization of the regulatory region of the dopa decarboxylase gene in Medaka: an in vivo green fluorescent protein reporter assay combined with a simple TA-cloning method.

Authors:  Kazuhiro E Fujimori
Journal:  Mol Biotechnol       Date:  2008-11-06       Impact factor: 2.695

7.  Structural basis for divergent and convergent evolution of catalytic machineries in plant aromatic amino acid decarboxylase proteins.

Authors:  Michael P Torrens-Spence; Ying-Chih Chiang; Tyler Smith; Maria A Vicent; Yi Wang; Jing-Ke Weng
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

8.  Function and evolution of the serotonin-synthetic bas-1 gene and other aromatic amino acid decarboxylase genes in Caenorhabditis.

Authors:  Emily E Hare; Curtis M Loer
Journal:  BMC Evol Biol       Date:  2004-08-02       Impact factor: 3.260

9.  Crystal structure of Oryza sativa TDC reveals the substrate specificity for TDC-mediated melatonin biosynthesis.

Authors:  Yuanze Zhou; Lijing Liao; Xikai Liu; Biao Liu; Xinxin Chen; Yan Guo; Chuanlong Huang; Yucheng Zhao; Zhixiong Zeng
Journal:  J Adv Res       Date:  2020-06-12       Impact factor: 10.479

10.  Crystal structure of tyrosine decarboxylase and identification of key residues involved in conformational swing and substrate binding.

Authors:  Haixia Zhu; Guochao Xu; Kai Zhang; Xudong Kong; Ruizhi Han; Jiahai Zhou; Ye Ni
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

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