Literature DB >> 8879364

The effect of storage on Guthrie cards: implications for deoxyribonucleic acid amplification.

G S Makowski1, E L Davis, S M Hopfer.   

Abstract

The effect of storage on (1) amplifiability of nucleic acid (present at low level) and (2) properties of whole blood polymerase chain reaction (PCR) inhibitors (present at high levels) in Guthrie card bloodspots was evaluated. Natural PCR inhibitors (protein, hemoglobin, iron) were selectively eluted from Guthrie cards (1 to 30 mo storage) under nondenaturing conditions and quantitated. The PCR was performed by direct amplification. It was found that PCR inhibitors become increasingly resistant to elution ("fixed") over time. For example, 600 micrograms protein, 1.87 au hemoglobin, and 374 ng iron were solubilized from 1 mo bloodspots. In contrast, only 137 micrograms protein (22 percent), 0.34 au hemoglobin (18 percent), and 147 ng iron (39 percent) were solubilized from 30 mo bloodspots. Fixation does not result from excessive desiccation since bloodspot weight 2.20 mg +/- 0.21 (1 mo) and 1.92 mg +/- 0.31 (30 mo) was not significantly changed (p > 0.05). The majority of protein was characterized as albumin, and two rbc metal-containing proteins, carbonic anhydrase and hemoglobin by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Despite the presence of "fixed" PCR inhibitors, it was found that bloodspots stored 1 to 30 mo could be amplified for two regions (98 bp and 491 bp amplicons) encoding the delta F508 cystic fibrosis mutation. It is suggested that nucleic acid also becomes "fixed" to the filter paper matrix and accounts, in part, for the ability to amplify Guthrie cards by direct PCR and low yield of deoxyribonucleic acid (DNA) reported for microextraction methods.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8879364

Source DB:  PubMed          Journal:  Ann Clin Lab Sci        ISSN: 0091-7370            Impact factor:   1.256


  8 in total

Review 1.  The use of the dried blood spot sample in epidemiological studies.

Authors:  S P Parker; W D Cubitt
Journal:  J Clin Pathol       Date:  1999-09       Impact factor: 3.411

2.  Visual automated fluorescence electrophoresis provides simultaneous quality, quantity, and molecular weight spectra for genomic DNA from archived neonatal blood spots.

Authors:  Tara L Klassen; Janice Drabek; Torjbörn Tomson; Olafur Sveinsson; Ulrika von Döbeln; Jeffrey L Noebels; Alicia M Goldman
Journal:  J Mol Diagn       Date:  2013-03-19       Impact factor: 5.568

3.  Hi-Plex targeted sequencing is effective using DNA derived from archival dried blood spots.

Authors:  T Nguyen-Dumont; M Mahmoodi; F Hammet; T Tran; H Tsimiklis; G G Giles; J L Hopper; M C Southey; D J Park
Journal:  Anal Biochem       Date:  2014-10-30       Impact factor: 3.365

4.  Nested PCR Amplification Secures DNA Template Quality and Quantity in Real-time mCOP-PCR Screening for SMA.

Authors:  Yogik Onky Silvana Wijaya; Emma Tabe Eko Niba; Mawaddah Ar Rochmah; Nur Imma Fatimah Harahap; Hiroyuki Awano; Yasuhiro Takeshima; Toshio Saito; Kayoko Saito; Atsuko Takeuchi; Poh San Lai; Yoshihiro Bouike; Hisahide Nishio; Masakazu Shinohara
Journal:  Kobe J Med Sci       Date:  2019-07-16

5.  The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array.

Authors:  JiHoon E Joo; Ee Ming Wong; Laura Baglietto; Chol-Hee Jung; Helen Tsimiklis; Daniel J Park; Nicholas C Wong; Dallas R English; John L Hopper; Gianluca Severi; Graham G Giles; Melissa C Southey
Journal:  BMC Biotechnol       Date:  2013-03-15       Impact factor: 2.563

6.  Apo E genotyping from blood stored on filter paper.

Authors:  Rizwana Quraishi; Ramakrishnan Lakshmy; Kalpana Luthra; Ashok K Mukhopadhyay; Bansi L Jailkhani
Journal:  Indian J Med Res       Date:  2012-03       Impact factor: 2.375

7.  Isolation of human genomic DNA for genetic analysis from premature neonates: a comparison between newborn dried blood spots, whole blood and umbilical cord tissue.

Authors:  Shavanthi Rajatileka; Karen Luyt; Manal El-Bokle; Maggie Williams; Helena Kemp; Elek Molnár; Anikó Váradi
Journal:  BMC Genet       Date:  2013-10-29       Impact factor: 2.797

8.  Comparative analytical utility of DNA derived from alternative human specimens for molecular autopsy and diagnostics.

Authors:  Tara L Klassen; Eva-Lotta von Rüden; Janice Drabek; Jeffrey L Noebels; Alica M Goldman
Journal:  J Mol Diagn       Date:  2012-07-13       Impact factor: 5.568

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.