Literature DB >> 8845764

Destabilizing effect of proline substitutions in two helical regions of T4 lysozyme: leucine 66 to proline and leucine 91 to proline.

T M Gray1, E J Arnoys, S Blankespoor, T Born, R Jagar, R Everman, D Plowman, A Stair, D Zhang.   

Abstract

A class of temperature-sensitive (ts) mutants of T4 lysozyme with reduced activity at 30 degrees C and no activity at 43 degrees C has been selected. These mutants, designated "tight" ts mutants, differ from most other T4 lysozyme mutants that are active at 43 degrees C, but only manifest their ts lesion by a reduced halo size around phage plaques after exposure of the growth plates to chloroform vapors. For example, in the series of T4 lysozyme mutants at position 157, the original randomly selected mutant, T1571, is the least stable of the series, yet, apart from the halo assay and subsequent in vitro protein stability measurements, this mutant is indistinguishable from wild type (WT) even at 43 degrees C. Two mutants were identified: L91P and L66P. Both insert proline residues into alpha-helical regions of the WT protein structure. The stabilities (delta delta G) as determined by urea denaturation are 8.2 kcal/mol for L91P and 7.1 kcal/mol for L66P. CD spectra indicate that no major conformational changes have occurred in the mutant structures. The structures of the mutants were modeled with a 40-ps molecular dynamics simulation using explicit solvent. For L91P, the reduction of stability appears to be due to an unsatisfied hydrogen bond in the alpha-helix and to a new buried cavity. For L66P, the reduction of stability appears to be due to a disruption of the interdomain alpha-helix, at least two unsatisfied hydrogen bonds, and a newly formed solvent-filled pocket that protrudes into the hydrophobic core, possibly reducing the stabilizing contribution of a partially buried intrachain salt bridge.

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Year:  1996        PMID: 8845764      PMCID: PMC2143386          DOI: 10.1002/pro.5560050419

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  28 in total

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Authors:  G J Kleywegt; T A Jones
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Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

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Authors:  C R Matthews
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

5.  Molecular basis of a mutational hot spot in the lysozyme gene of bacteriophage T4.

Authors:  Y Okada; G Streisinger; J E Owen; J Newton; A Tsugita; M Inouye
Journal:  Nature       Date:  1972-04-14       Impact factor: 49.962

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Authors:  E N Baker; R E Hubbard
Journal:  Prog Biophys Mol Biol       Date:  1984       Impact factor: 3.667

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Authors:  J E Owen; D W Schultz; A Taylor; G R Smith
Journal:  J Mol Biol       Date:  1983-04-05       Impact factor: 5.469

8.  pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme.

Authors:  D E Anderson; W J Becktel; F W Dahlquist
Journal:  Biochemistry       Date:  1990-03-06       Impact factor: 3.162

9.  Contribution of hydrogen bonding to the conformational stability of ribonuclease T1.

Authors:  B A Shirley; P Stanssens; U Hahn; C N Pace
Journal:  Biochemistry       Date:  1992-01-28       Impact factor: 3.162

10.  Accommodation of amino acid insertions in an alpha-helix of T4 lysozyme. Structural and thermodynamic analysis.

Authors:  D W Heinz; W A Baase; X J Zhang; M Blaber; F W Dahlquist; B W Matthews
Journal:  J Mol Biol       Date:  1994-02-25       Impact factor: 5.469

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  7 in total

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Authors:  A Chakrabarti; S Srivastava; C P Swaminathan; A Surolia; R Varadarajan
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  The mutational spectrum of the NF1 gene in neurofibromatosis type I patients from UAE.

Authors:  Salma Ben-Salem; Aisha M Al-Shamsi; Bassam R Ali; Lihadh Al-Gazali
Journal:  Childs Nerv Syst       Date:  2014-01-11       Impact factor: 1.475

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Authors:  B O Villoutreix; O Teleman; B Dahlbäck
Journal:  J Comput Aided Mol Des       Date:  1997-05       Impact factor: 3.686

4.  Structural features of the scaffold interaction domain at the N terminus of the major capsid protein (VP5) of herpes simplex virus type 1.

Authors:  Eugene Huang; Edward M Perkins; Prashant Desai
Journal:  J Virol       Date:  2007-06-20       Impact factor: 5.103

5.  Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension.

Authors:  Michael P Heaton; Timothy P L Smith; Jacky K Carnahan; Veronica Basnayake; Jiansheng Qiu; Barry Simpson; Theodore S Kalbfleisch
Journal:  F1000Res       Date:  2016-08-16

6.  Hydrophobicity of Residue 128 of the Stress-Inducible Sigma Factor RpoS Is Critical for Its Activity.

Authors:  Tadayuki Iwase; Takashi Matsuo; Saiko Nishioka; Akiko Tajima; Yoshimitsu Mizunoe
Journal:  Front Microbiol       Date:  2017-04-26       Impact factor: 5.640

7.  Novel NDUFA13 Mutations Associated with OXPHOS Deficiency and Leigh Syndrome: A Second Family Report.

Authors:  Adrián González-Quintana; Inés García-Consuegra; Amaya Belanger-Quintana; Pablo Serrano-Lorenzo; Alejandro Lucia; Alberto Blázquez; Jorge Docampo; Cristina Ugalde; María Morán; Joaquín Arenas; Miguel A Martín
Journal:  Genes (Basel)       Date:  2020-07-26       Impact factor: 4.096

  7 in total

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