Literature DB >> 8843436

A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome.

M Redenbach1, H M Kieser, D Denapaite, A Eichner, J Cullum, H Kinashi, D A Hopwood.   

Abstract

A Supercos-1 library carrying chromosomal DNA of a plasmid-free derivative of Streptomyces coelicolor A3(2) was organized into an ordered encyclopaedia of overlapping clones by hybridization. The minimum set of overlapping clones representing the entire chromosome (with three short gaps) consists of 319 cosmids. The average insert size is 37.5 kb and the set of clones therefore divides the chromosome into 637 alternating unique and overlapping segments which have an average length of approx. 12.5 kb. More than 170 genes, gene clusters and other genetic markers were mapped to their specific segment by hybridization to the encyclopaedia. Genes could be cloned by direct transformation and complementation of S. coelicolor mutants with cosmids isolated from Escherichia coli, selecting for insertion into the chromosome by homologous recombination. As in other streptomycetes, the ends of the chromosome have long terminal inverted repeats.

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Year:  1996        PMID: 8843436     DOI: 10.1046/j.1365-2958.1996.6191336.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  165 in total

1.  Analysis of fusion junctions of circularized chromosomes in Streptomyces griseus.

Authors:  D Kameoka; A Lezhava; H Zenitani; K Hiratsu; M Kawamoto; K Goshi; K Inada; H Shinkawa; H Kinashi
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

2.  A gene encoding a novel multidomain beta-1,4-mannanase from Caldibacillus cellulovorans and action of the recombinant enzyme on kraft pulp.

Authors:  A Sunna; M D Gibbs; C W Chin; P J Nelson; P L Bergquist
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

3.  Genetic and biochemical characterization of a highly thermostable alpha-L-arabinofuranosidase from Thermobacillus xylanilyticus.

Authors:  T Debeche; N Cummings; I Connerton; P Debeire; M J O'Donohue
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

4.  Characterization of the protocatechuic acid catabolic gene cluster from Streptomyces sp. strain 2065.

Authors:  S G Iwagami; K Yang; J Davies
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

5.  A complex insertion sequence cluster at a point of interaction between the linear plasmid SCP1 and the linear chromosome of Streptomyces coelicolor A3(2).

Authors:  M Yamasaki; K Miyashita; J Cullum; H Kinashi
Journal:  J Bacteriol       Date:  2000-06       Impact factor: 3.490

6.  Backbone NMR assignment and secondary structure of ribosome recycling factor (RRF) from Pseudomonas aeruginosa.

Authors:  H Kashimori; T Yoshida; H Kijima; H Shimahara; S Uchiyama; T Ishino; M Shuda; H Nakano; Y Shibata; Y Saihara; T Ohkubo; T Yoshida; A Kaji; Y Kobayashi
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

7.  DNA sequence and comparison of virulence plasmids from Rhodococcus equi ATCC 33701 and 103.

Authors:  S Takai; S A Hines; T Sekizaki; V M Nicholson; D A Alperin; M Osaki; D Takamatsu; M Nakamura; K Suzuki; N Ogino; T Kakuda; H Dan; J F Prescott
Journal:  Infect Immun       Date:  2000-12       Impact factor: 3.441

8.  Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.

Authors:  D Rother; H J Henrich; A Quentmeier; F Bardischewsky; C G Friedrich
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

9.  DNA from uncultured organisms as a source of 2,5-diketo-D-gluconic acid reductases.

Authors:  W H Eschenfeldt; L Stols; H Rosenbaum; Z S Khambatta; E Quaite-Randall; S Wu; D C Kilgore; J D Trent; M I Donnelly
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

10.  Degradation of aromatics and chloroaromatics by Pseudomonas sp. strain B13: cloning, characterization, and analysis of sequences encoding 3-oxoadipate:succinyl-coenzyme A (CoA) transferase and 3-oxoadipyl-CoA thiolase.

Authors:  Markus Göbel; Kerstin Kassel-Cati; Eberhard Schmidt; Walter Reineke
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

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