Literature DB >> 8836098

Aromatic hydrogen bond in sequence-specific protein DNA recognition.

G Parkinson, A Gunasekera, J Vojtechovsky, X Zhang, T A Kunkel, H Berman, R H Ebright.   

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Year:  1996        PMID： 8836098     DOI： 10.1038/nsb1096-837

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


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  17 in total

1.  NCI: A server to identify non-canonical interactions in protein structures.

Authors:  M Madan Babu
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Solvation of nucleosides in aqueous mixtures of organic solvents: relevance to DNA open basepairs.

Authors:  Anas M Ababneh; C C Large; S Georghiou
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

3.  WebLogo: a sequence logo generator.

Authors:  Gavin E Crooks; Gary Hon; John-Marc Chandonia; Steven E Brenner
Journal:  Genome Res       Date:  2004-06       Impact factor: 9.043

Review 4.  Catabolite activator protein: DNA binding and transcription activation.

Authors:  Catherine L Lawson; David Swigon; Katsuhiko S Murakami; Seth A Darst; Helen M Berman; Richard H Ebright
Journal:  Curr Opin Struct Biol       Date:  2004-02       Impact factor: 6.809

5.  Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.

Authors:  Andrew A Napoli; Catherine L Lawson; Richard H Ebright; Helen M Berman
Journal:  J Mol Biol       Date:  2006-01-03       Impact factor: 5.469

6.  Crystal structure of the Vibrio cholerae quorum-sensing regulatory protein HapR.

Authors:  Rukman S De Silva; Gabriela Kovacikova; Wei Lin; Ronald K Taylor; Karen Skorupski; F Jon Kull
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

7.  An analysis of the relationship between hydration and protein-DNA interactions.

Authors:  J Woda; B Schneider; K Patel; K Mistry; H M Berman
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

8.  DNA bending: the prevalence of kinkiness and the virtues of normality.

Authors:  R E Dickerson
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

9.  NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions.

Authors:  N M Luscombe; R A Laskowski; J M Thornton
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

10.  A structural-alphabet-based strategy for finding structural motifs across protein families.

Authors:  Chih Yuan Wu; Yao Chi Chen; Carmay Lim
Journal:  Nucleic Acids Res       Date:  2010-06-04       Impact factor: 16.971
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