Literature DB >> 8819156

Energetics of hydrogen bonding in proteins: a model compound study.

S M Habermann1, K P Murphy.   

Abstract

Differences in the energetics of amide-amide and amide-hydroxyl hydrogen bonds in proteins have been explored from the effect of hydroxyl groups on the structure and dissolution energetics of a series of crystalline cyclic dipeptides. The calorimetrically determined energetics are interpreted in light of the crystal structures of the studied compounds. Our results indicate that the amide-amide and amide-hydroxyl hydrogen bonds both provide considerable enthalpic stability, but that the amide-amide hydrogen bond is about twice that of the amide-hydroxyl. Additionally, the interaction of the hydroxyl group with water is seen most readily in its contributions to entropy and heat capacity changes. Surprisingly, the hydroxyl group shows weakly hydrophobic behavior in terms of these contributions. These results can be used to understand the effects of mutations on the stability of globular proteins.

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Year:  1996        PMID: 8819156      PMCID: PMC2143469          DOI: 10.1002/pro.5560050702

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Analysis of the heat capacity dependence of protein folding.

Authors:  A S Yang; K A Sharp; B Honig
Journal:  J Mol Biol       Date:  1992-10-05       Impact factor: 5.469

2.  The meaning of hydrophobicity.

Authors:  K A Dill
Journal:  Science       Date:  1990-10-12       Impact factor: 47.728

3.  Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: protein unfolding effects.

Authors:  P L Privalov; G I Makhatadze
Journal:  J Mol Biol       Date:  1990-05-20       Impact factor: 5.469

4.  Solvent water and protein behavior: view through a retroscope.

Authors:  I M Klotz
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

5.  Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

Authors:  K H Lee; D Xie; E Freire; L M Amzel
Journal:  Proteins       Date:  1994-09

Review 6.  Amino acid, peptide, and protein volume in solution.

Authors:  A A Zamyatnin
Journal:  Annu Rev Biophys Bioeng       Date:  1984

Review 7.  Principles that determine the structure of proteins.

Authors:  C Chothia
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

8.  An equation of state describing hydrophobic interactions.

Authors:  S J Gill; I Wadsö
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

9.  Contribution of hydrogen bonding to the conformational stability of ribonuclease T1.

Authors:  B A Shirley; P Stanssens; U Hahn; C N Pace
Journal:  Biochemistry       Date:  1992-01-28       Impact factor: 3.162

10.  Toward a simplification of the protein folding problem: a stabilizing polyalanine alpha-helix engineered in T4 lysozyme.

Authors:  X J Zhang; W A Baase; B W Matthews
Journal:  Biochemistry       Date:  1991-02-26       Impact factor: 3.162

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  32 in total

1.  Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble.

Authors:  H Pan; J C Lee; V J Hilser
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Thermodynamic propensities of amino acids in the native state ensemble: implications for fold recognition.

Authors:  J O Wrabl; S A Larson; V J Hilser
Journal:  Protein Sci       Date:  2001-05       Impact factor: 6.725

3.  Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems.

Authors:  Donald J Jacobs; S Dallakyan; G G Wood; A Heckathorne
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-12-31

4.  Thermodynamic environments in proteins: fundamental determinants of fold specificity.

Authors:  James O Wrabl; Scott A Larson; Vincent J Hilser
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

5.  Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins.

Authors:  Steven T Whitten; Bertrand García-Moreno E; Vincent J Hilser
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

6.  Binding-linked protonation of a DNA minor-groove agent.

Authors:  Binh Nguyen; Jaroslav Stanek; W David Wilson
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

7.  Contribution of charged groups to the enthalpic stabilization of the folded states of globular proteins.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  J Phys Chem B       Date:  2008-02-28       Impact factor: 2.991

8.  Quantitative assessment of protein structural models by comparison of H/D exchange MS data with exchange behavior accurately predicted by DXCOREX.

Authors:  Tong Liu; Dennis Pantazatos; Sheng Li; Yoshitomo Hamuro; Vincent J Hilser; Virgil L Woods
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-20       Impact factor: 3.109

9.  Solvation in protein (un)folding of melittin tetramer-monomer transition.

Authors:  Christina M Othon; Oh-Hoon Kwon; Milo M Lin; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

10.  Sequence specific and high affinity recognition of 5'-ACGCGT-3' by rationally designed pyrrole-imidazole H-pin polyamides: thermodynamic and structural studies.

Authors:  Hilary Mackay; Toni Brown; Peter B Uthe; Laura Westrate; Alan Sielaff; Justin Jones; James P Lajiness; Jerome Kluza; Caroline O'Hare; Binh Nguyen; Zach Davis; Chrystal Bruce; W David Wilson; John A Hartley; Moses Lee
Journal:  Bioorg Med Chem       Date:  2008-09-13       Impact factor: 3.641

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