Literature DB >> 8810926

High frequency (139.5 GHz) electron paramagnetic resonance characterization of Mn(II)-H2(17)O interactions in GDP and GTP forms of p21 ras.

B F Bellew1, C J Halkides, G J Gerfen, R G Griffin, D J Singel.   

Abstract

As a molecular switch, the ras protein p21 undergoes structural changes that couple recognition sites on the protein surface to the guanine nucleotide-divalent metal ion binding site. X-ray crystallographic studies of p21 suggest that coordination between threonine-35 and the divalent metal ion plays an important role in these conformational changes. Recent ESEEM studies of p21 in solution, however, place threonine-35 more distant from the metal and were interpreted as weak or indirect coordination of this residue. We report high frequency (139.5 GHz) EPR spectroscopy of p21.Mn(II) complexes of two guanine nucleotides that probes the link between threonine-35 and the divalent metal ion. By analysis of high-frequency EPR spectra, we determine the number of water molecules in the first coordination sphere of the manganous ion to be four in p21.Mn(II).GDP, consistent with prior low-frequency EPR and X-ray crystallographic studies. In the complex of p21 with a GTP analog, p21.Mn(II).GMPPNP, we determine the hydration number to be 2, also consistent with crystal structures. This result rules out indirect coordination of threonine-35 in the solution structure of p21.Mn(II).GMPPNP, and implicates direct, weak coordination of this residue as suggested by Halkides et al. [(1994) Biochemistry 33,4019]. The 17O hyperfine coupling constant of H2(17)O is determined as 0.25 mT in the GDP from and 0.28 mT in the GTP form. These values are similar to reported values for 17O-enriched aquo ligands and some phosphato ligands in Mn(II) complexes. The high magnetic field strength (4.9 T) employed in these 139.5 GHz EPR measurements leads to a narrowing of the Mn(II) EPR lines that facilitates the determination of 17O hyperfine interactions.

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Year:  1996        PMID: 8810926     DOI: 10.1021/bi960594b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Relation between the conformational heterogeneity and reaction cycle of Ras: molecular simulation of Ras.

Authors:  Chigusa Kobayashi; Shinji Saito
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

2.  Dynamic properties of the Ras switch I region and its importance for binding to effectors.

Authors:  M Spoerner; C Herrmann; I R Vetter; H R Kalbitzer; A Wittinghofer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

3.  Assignment of EPR Transitions in a Manganese-Containing Lipoxygenase and Prediction of Local Structure.

Authors:  B J Gaffney; C Su; E H Oliw
Journal:  Appl Magn Reson       Date:  2001       Impact factor: 0.831

4.  Structural basis for conformational dynamics of GTP-bound Ras protein.

Authors:  Fumi Shima; Yuichi Ijiri; Shin Muraoka; Jingling Liao; Min Ye; Mitsugu Araki; Kousuke Matsumoto; Naoki Yamamoto; Takeshi Sugimoto; Yoko Yoshikawa; Takashi Kumasaka; Masaki Yamamoto; Atsuo Tamura; Tohru Kataoka
Journal:  J Biol Chem       Date:  2010-05-17       Impact factor: 5.157

5.  Water counting: quantitating the hydration level of paramagnetic metal ions bound to nucleotides and nucleic acids.

Authors:  Charles G Hoogstraten; R David Britt
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

Review 6.  Examples of high-frequency EPR studies in bioinorganic chemistry.

Authors:  K Kristoffer Andersson; Peter P Schmidt; Bettina Katterle; Kari R Strand; Amy E Palmer; Sang-Kyu Lee; Edward I Solomon; Astrid Gräslund; Anne-Laure Barra
Journal:  J Biol Inorg Chem       Date:  2002-12-20       Impact factor: 3.358

7.  A discrete water exit pathway in the membrane protein cytochrome c oxidase.

Authors:  Bryan Schmidt; John McCracken; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-05       Impact factor: 11.205

  7 in total

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