Literature DB >> 8804832

Thermodynamics of base pairing.

D H Turner1.   

Abstract

The study of the thermodynamics of base pairing is a rapidly expanding field due to its importance for taking advantage of opportunities presented by the growing database of nucleic acid sequences. Both natural and unnatural nucleic acids are being studied. The determination of nearest-neighbor parameters from optical melting data for RNA-DNA and DNA-DNA duplexes with Watson-Crick base pairs is particularly noteworthy. The foundations are also being laid for a theoretical understanding of these thermodynamics.

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Year:  1996        PMID: 8804832     DOI: 10.1016/s0959-440x(96)80047-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

1.  The thermodynamic origin of the stability of a thermophilic ribozyme.

Authors:  X W Fang; B L Golden; K Littrell; V Shelton; P Thiyagarajan; T Pan; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

2.  Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine.

Authors:  P J Lao; D R Forsdyke
Journal:  Genome Res       Date:  2000-02       Impact factor: 9.043

3.  A simple fluorimetric method for the estimation of DNA-DNA relatedness between closely related microorganisms by thermal denaturation temperatures.

Authors:  Juan M Gonzalez; Cesareo Saiz-Jimenez
Journal:  Extremophiles       Date:  2004-09-04       Impact factor: 2.395

Review 4.  RNA misfolding and the action of chaperones.

Authors:  Rick Russell
Journal:  Front Biosci       Date:  2008-01-01

5.  Accurate SHAPE-directed RNA structure determination.

Authors:  Katherine E Deigan; Tian W Li; David H Mathews; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-24       Impact factor: 11.205

6.  Opening of the extraordinarily stable mini-hairpin d(GCGAAGC).

Authors:  B Jollès; M Réfrégiers; A Laigle
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

7.  In vitro selection of hammerhead ribozymes containing a bulged nucleotide in stem II.

Authors:  J B Thomson; S T Sigurdsson; A Zeuch; F Eckstein
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

8.  Mechanical properties of base-modified DNA are not strictly determined by base stacking or electrostatic interactions.

Authors:  Justin P Peters; Lauren S Mogil; Micah J McCauley; Mark C Williams; L James Maher
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

9.  DiProGB: the dinucleotide properties genome browser.

Authors:  Maik Friedel; Swetlana Nikolajewa; Jürgen Sühnel; Thomas Wilhelm
Journal:  Bioinformatics       Date:  2009-07-15       Impact factor: 6.937

10.  Aromatic N versus aromatic F: bioisosterism discovered in RNA base pairing interactions leads to a novel class of universal base analogs.

Authors:  Alrun N Koller; Jelena Bozilovic; Joachim W Engels; Holger Gohlke
Journal:  Nucleic Acids Res       Date:  2010-01-15       Impact factor: 16.971

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