Literature DB >> 8800473

Computational studies of protein folding.

R A Friesner1, J R Gunn.   

Abstract

This review describes computational approaches to the determination of protein structure from sequence. The emphasis is on reduced protein models that are sufficiently accurate to represent protein structure at low resolution, yet are computationally efficient enough to allow the extensive search of phase space required to locate the global minimum from an unfolded state. A discussion of both potential functions and algorithmic simulation strategies for such models are presented, along with a number of specific models that have been developed and successfully applied to proteins as large as myoglobin. The results indicate that significant progress is being made in understanding the requirements for computational prediction of protein structure.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8800473     DOI: 10.1146/annurev.bb.25.060196.001531

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  5 in total

1.  Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques.

Authors:  A Kolinski; B Ilkowski; J Skolnick
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

Review 2.  Biomolecular simulation and modelling: status, progress and prospects.

Authors:  Marc W van der Kamp; Katherine E Shaw; Christopher J Woods; Adrian J Mulholland
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

3.  A knowledge-based scoring function based on residue triplets for protein structure prediction.

Authors:  Shing-Chung Ngan; Michael T Inouye; Ram Samudrala
Journal:  Protein Eng Des Sel       Date:  2006-03-13       Impact factor: 1.650

4.  Potentials 'R' Us web-server for protein energy estimations with coarse-grained knowledge-based potentials.

Authors:  Yaping Feng; Andrzej Kloczkowski; Robert L Jernigan
Journal:  BMC Bioinformatics       Date:  2010-02-17       Impact factor: 3.169

5.  Inactivation and secondary structure in the D4/S4-5 region of the SkM1 sodium channel.

Authors:  G N Filatov; T P Nguyen; S D Kraner; R L Barchi
Journal:  J Gen Physiol       Date:  1998-06       Impact factor: 4.086

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.