Literature DB >> 8795243

Use of repetitive intergenic DNA sequences to classify pathogenic and disease-suppressive Streptomyces strains.

M J Sadowsky1, L L Kinkel, J H Bowers, J L Schottel.   

Abstract

PCR DNA fingerprinting using repetitive intergenic DNA sequences (rep-PCR) was investigated as a means of differentiating between closely related strains of Streptomyces which were, in some cases, indistinguishable by other classification methods. Our results demonstrated that the majority of strains had unique rep-PCR DNA fingerprints and established that the technique could be a very useful tool in rapidly determining strain identity.

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Year:  1996        PMID： 8795243      PMCID： PMC168149          DOI： 10.1128/aem.62.9.3489-3493.1996

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  15 in total

Review 1.  Short, interspersed repetitive DNA sequences in prokaryotic genomes.

Authors:  J R Lupski; G M Weinstock
Journal:  J Bacteriol       Date:  1992-07       Impact factor: 3.490

2.  ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria.

Authors:  C S Hulton; C F Higgins; P M Sharp
Journal:  Mol Microbiol       Date:  1991-04       Impact factor: 3.501

3.  Diversity among Streptomyces Strains Causing Potato Scab.

Authors:  C Doering-Saad; P Kämpfer; S Manulis; G Kritzman; J Schneider; J Zakrzewska-Czerwinska; H Schrempf; I Barash
Journal:  Appl Environ Microbiol       Date:  1992-12       Impact factor: 4.792

4.  Isolation and characterization of actinomycete antagonists of a fungal root pathogen.

Authors:  D L Crawford; J M Lynch; J M Whipps; M A Ousley
Journal:  Appl Environ Microbiol       Date:  1993-11       Impact factor: 4.792

5.  Bacteriocins of the phytopathogens Pseudomonas syringae, P. glycinea, and P. phaseolicola.

Authors:  A K Vidaver; M L Mathys; M E Thomas; M L Schuster
Journal:  Can J Microbiol       Date:  1972-06       Impact factor: 2.419

6.  Repetitive extragenic palindromic sequences: a major component of the bacterial genome.

Authors:  M J Stern; G F Ames; N H Smith; E C Robinson; C F Higgins
Journal:  Cell       Date:  1984-07       Impact factor: 41.582

7.  A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae.

Authors:  B Martin; O Humbert; M Camara; E Guenzi; J Walker; T Mitchell; P Andrew; M Prudhomme; G Alloing; R Hakenbeck
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

8.  DNA relatedness among strains of the sweet potato pathogen Streptomyces ipomoea (Person and Martin 1940) Waksman and Henrici 1948.

Authors:  D P Labeda; A J Lyons
Journal:  Appl Environ Microbiol       Date:  1992-02       Impact factor: 4.792

9.  Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains.

Authors:  A K Judd; M Schneider; M J Sadowsky; F J de Bruijn
Journal:  Appl Environ Microbiol       Date:  1993-06       Impact factor: 4.792

10.  Influence of disease-suppressive strains of Streptomyces on the native Streptomyces community in soil as determined by the analysis of cellular fatty acids.

Authors:  J H Bowers; L L Kinkel; R K Jones
Journal:  Can J Microbiol       Date:  1996-01       Impact factor: 2.419
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  8 in total

1.  Use of repetitive DNA sequences and the PCR To differentiate Escherichia coli isolates from human and animal sources.

Authors:  P E Dombek; L K Johnson; S T Zimmerley; M J Sadowsky
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

2.  Characterization of Nocardia asteroides isolates from different ecological habitats on the basis of repetitive extragenic palindromic-PCR fingerprinting.

Authors:  Hideki Yamamura; Masayuki Hayakawa; Youji Nakagawa; Yuzuru Iimura
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

3.  Spatial variation in Streptomyces genetic composition and diversity in a prairie soil.

Authors:  A L Davelos; K Xiao; D A Samac; A P Martin; L L Kinkel
Journal:  Microb Ecol       Date:  2004-10-28       Impact factor: 4.552

4.  Evaluation of genetic diversity among Pseudomonas citronellolis strains isolated from oily sludge-contaminated sites.

Authors:  Dhruva Bhattacharya; Priyangshu M Sarma; S Krishnan; Sanjeet Mishra; Banwari Lal
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

5.  Suitability of repetitive-DNA-sequence-based PCR fingerprinting for characterizing epidemic isolates of Salmonella enterica serovar Saintpaul.

Authors:  W Beyer; F M Mukendi; P Kimmig; R Böhm
Journal:  J Clin Microbiol       Date:  1998-06       Impact factor: 5.948

6.  Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution.

Authors:  LeeAnn K Johnson; Mary B Brown; Ethan A Carruthers; John A Ferguson; Priscilla E Dombek; Michael J Sadowsky
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

7.  Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench.

Authors:  Wasu Pathom-Aree; James E M Stach; Alan C Ward; Koki Horikoshi; Alan T Bull; Michael Goodfellow
Journal:  Extremophiles       Date:  2006-03-15       Impact factor: 2.395

8.  Determining sources of fecal bacteria in waterways.

Authors:  Tao Yan; Michael J Sadowsky
Journal:  Environ Monit Assess       Date:  2006-10-28       Impact factor: 3.307
  8 in total

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