Literature DB >> 8794393

PCR engineering of viral quasispecies: a new method to preserve and manipulate genetic diversity of RNA virus populations.

K M Chumakov1.   

Abstract

A PCR-based method for the controlled manipulation of individual genomic sites of poliovirus with concomitant preservation of the sequence heterogeneity of the rest of the genome is proposed. The new approach can be used for the creation of stable DNA repositories of populations of extremely heterogenous RNA viruses and may have implications for live vaccine technology.

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Year:  1996        PMID： 8794393      PMCID： PMC190799     

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  26 in total

1.  Correlation between amount of virus with altered nucleotide sequence and the monkey test for acceptability of oral poliovirus vaccine.

Authors:  K M Chumakov; L B Powers; K E Noonan; I B Roninson; I S Levenbook
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-01       Impact factor: 11.205

2.  RNA sequence variants in live poliovirus vaccine and their relation to neurovirulence.

Authors:  K M Chumakov; L P Norwood; M L Parker; E M Dragunsky; Y X Ran; I S Levenbook
Journal:  J Virol       Date:  1992-02       Impact factor: 5.103

3.  Microevolution of type 3 Sabin strain of poliovirus in cell cultures and its implications for oral poliovirus vaccine quality control.

Authors:  G V Rezapkin; L P Norwood; R E Taffs; E M Dragunsky; I S Levenbook; K M Chumakov
Journal:  Virology       Date:  1995-08-20       Impact factor: 3.616

4.  Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase.

Authors:  K R Tindall; T A Kunkel
Journal:  Biochemistry       Date:  1988-08-09       Impact factor: 3.162

5.  Direct measurement of the poliovirus RNA polymerase error frequency in vitro.

Authors:  C D Ward; M A Stokes; J B Flanegan
Journal:  J Virol       Date:  1988-02       Impact factor: 5.103

6.  An infectious cDNA clone of the poliovirus Sabin strain could be used as a stable repository and inoculum for the oral polio live vaccine.

Authors:  M Kohara; S Abe; S Kuge; B L Semler; T Komatsu; M Arita; H Itoh; A Nomoto
Journal:  Virology       Date:  1986-05       Impact factor: 3.616

7.  The Jeryl Lynn vaccine strain of mumps virus is a mixture of two distinct isolates.

Authors:  M A Afzal; A R Pickford; T Forsey; A B Heath; P D Minor
Journal:  J Gen Virol       Date:  1993-05       Impact factor: 3.891

8.  Fitness of RNA virus decreased by Muller's ratchet.

Authors:  L Chao
Journal:  Nature       Date:  1990-11-29       Impact factor: 49.962

9.  Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet.

Authors:  E Duarte; D Clarke; A Moya; E Domingo; J Holland
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

10.  Determination of the poliovirus RNA polymerase error frequency at eight sites in the viral genome.

Authors:  C D Ward; J B Flanegan
Journal:  J Virol       Date:  1992-06       Impact factor: 5.103
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  11 in total

1.  Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines.

Authors:  Alexander Neverov; Konstantin Chumakov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

2.  Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

Authors:  Cara Carthel Burns; Jing Shaw; Ray Campagnoli; Jaume Jorba; Annelet Vincent; Jacqueline Quay; Olen Kew
Journal:  J Virol       Date:  2006-04       Impact factor: 5.103

3.  Development of a new oral poliovirus vaccine for the eradication end game using codon deoptimization.

Authors:  Jennifer L Konopka-Anstadt; Ray Campagnoli; Annelet Vincent; Jing Shaw; Ling Wei; Nhien T Wynn; Shane E Smithee; Erika Bujaki; Ming Te Yeh; Majid Laassri; Tatiana Zagorodnyaya; Amy J Weiner; Konstantin Chumakov; Raul Andino; Andrew Macadam; Olen Kew; Cara C Burns
Journal:  NPJ Vaccines       Date:  2020-03-20       Impact factor: 7.344

4.  Genomic analysis of vaccine-derived poliovirus strains in stool specimens by combination of full-length PCR and oligonucleotide microarray hybridization.

Authors:  Majid Laassri; Eugenia Dragunsky; Joan Enterline; Tatiana Eremeeva; Olga Ivanova; Kathleen Lottenbach; Robert Belshe; Konstantin Chumakov
Journal:  J Clin Microbiol       Date:  2005-06       Impact factor: 5.948

5.  Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses.

Authors:  Elena Cherkasova; Majid Laassri; Vladimir Chizhikov; Ekaterina Korotkova; Eugenia Dragunsky; Vadim I Agol; Konstantin Chumakov
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

6.  Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing.

Authors:  Malaya K Sahoo; Marisa Holubar; ChunHong Huang; Alisha Mohamed-Hadley; Yuanyuan Liu; Jesse J Waggoner; Stephanie B Troy; Lourdes Garcia-Garcia; Leticia Ferreyra-Reyes; Yvonne Maldonado; Benjamin A Pinsky
Journal:  J Clin Microbiol       Date:  2017-05-03       Impact factor: 5.948

7.  Deep sequencing prompts the modification of a real-time RT-PCR for the serotype-specific detection of polioviruses.

Authors:  Marisa Holubar; Malaya K Sahoo; ChunHong Huang; Alisha Mohamed-Hadley; Yuanyuan Liu; Jesse J Waggoner; Stephanie B Troy; Lourdes García-García; Leticia Ferreyra-Reyes; Yvonne Maldonado; Benjamin A Pinsky
Journal:  J Virol Methods       Date:  2018-11-14       Impact factor: 2.014

8.  Effective amplification of 20-kb DNA by reverse transcription PCR.

Authors:  V Thiel; A Rashtchian; J Herold; D M Schuster; N Guan; S G Siddell
Journal:  Anal Biochem       Date:  1997-10-01       Impact factor: 3.365

Review 9.  Self-Replicating RNA.

Authors:  Birke Andrea Tews; Gregor Meyers
Journal:  Methods Mol Biol       Date:  2017

10.  Interferon resistance of hepatitis C virus genotype 1b: relationship to nonstructural 5A gene quasispecies mutations.

Authors:  J M Pawlotsky; G Germanidis; A U Neumann; M Pellerin; P O Frainais; D Dhumeaux
Journal:  J Virol       Date:  1998-04       Impact factor: 5.103
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