Literature DB >> 8785279

Theoretical study of the distal-side steric and electrostatic effects on the vibrational characteristics of the FeCO unit of the carbonylheme proteins and their models.

B Kushkuley1, S S Stavrov.   

Abstract

The vibronic theory of activation and quantum chemical intermediate neglect of differential overlap (INDO) calculations are used to study the activation of carbon monoxide (change of the C-O bond index and force field constant) by the imidazole complex with heme in dependence on the distortion of the porphyrin ring, geometry of the CO coordination, iron-carbon and iron-imidazole distances, iron displacement out of the porphyrin plane, and presence of the charged groups in the heme environment. It is shown that the main contribution to the CO activation stems from the change in the sigma donation from the 5 sigma CO orbital to iron, and back-bonding from the iron to the 2 pi orbital of CO. It follows from the results that none of the studied distortions can explain, by itself, the wide variation of the C-O vibrational frequency in the experimentally studied model compounds and heme proteins. To study the dependence of the properties of the FeCO unit on the presence of charged groups in the heme environment, the latter are simulated by the homogeneous electric field and point charges of different magnitude and location. The results show that charged groups can strongly affect the strength of the C-O bond and its vibrational frequency. It is found that the charges located on the distal side of the heme plane can affect the Fe-C and C-O bond indexes (and, consequently, the Fe-C and C-O vibrational frequencies), both in the same and in opposite directions, depending on their position. The theoretical results allow us to understand the peculiarities of the effect of charged groups on the properties of the FeCO unit both in heme proteins and in their model compounds.

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Year:  1996        PMID: 8785279      PMCID: PMC1225049          DOI: 10.1016/S0006-3495(96)79680-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

Review 1.  Cytochrome P450 and biological hydroxylation reactions.

Authors:  V Ullrich
Journal:  Top Curr Chem       Date:  1979

2.  Stereochemistry of carbon monoxide binding to myoglobin and hemoglobin.

Authors:  D A Case; M Karplus
Journal:  J Mol Biol       Date:  1978-08-25       Impact factor: 5.469

3.  Real space refinement of neutron diffraction data from sperm whale carbonmonoxymyoglobin.

Authors:  J C Hanson; B P Schoenborn
Journal:  J Mol Biol       Date:  1981-11-25       Impact factor: 5.469

4.  CO and O2 complexes of soybean leghemoglobins: pH effects upon infrared and visible spectra. Comparisons with CO and O2 complexes of myoglobin and hemoglobin.

Authors:  W H Fuchsman; C A Appleby
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

5.  An infrared study of NO bonding to heme B and hemoglobin A. Evidence for inositol hexaphosphate induced cleavage of proximal histidine to iron bonds.

Authors:  J C Maxwell; W S Caughey
Journal:  Biochemistry       Date:  1976-01-27       Impact factor: 3.162

6.  Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.

Authors:  J O Alben; D Beece; S F Bowne; W Doster; L Eisenstein; H Frauenfelder; D Good; J D McDonald; M C Marden; P P Moh; L Reinisch; A H Reynolds; E Shyamsunder; K T Yue
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

7.  Structure of carboxymyoglobin in crystals and in solution.

Authors:  M W Makinen; R A Houtchens; W S Caughey
Journal:  Proc Natl Acad Sci U S A       Date:  1979-12       Impact factor: 11.205

8.  Resonance Raman detection of Fe-CO stretching and Fe-C-O bending vibrations in sterically hindered carbonmonoxy "strapped hemes". A structural probe of Fe-C-O distortion.

Authors:  N T Yu; E A Kerr; B Ward; C K Chang
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

9.  Resonance Raman studies of carbon monoxide binding to iron "picket fence" porphyrin with unhindered and hindered axial bases. An inverse relationship between binding affinity and the strength of iron-carbon bond.

Authors:  E A Kerr; H C Mackin; N T Yu
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

10.  The vibrational bands of carbon monoxide bound to hemes or metal surfaces.

Authors:  J Paul; M L Smith; K G Paul
Journal:  Biochim Biophys Acta       Date:  1985-12-20
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  18 in total

1.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

5.  Probing electric fields in protein cavities by using the vibrational stark effect of carbon monoxide.

Authors:  Hartwig Lehle; Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Stephanus Fengler; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

6.  Infrared absorption study of the heme pocket dynamics of carbonmonoxyheme proteins.

Authors:  Andras D Kaposi; Jane M Vanderkooi; Solomon S Stavrov
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

7.  Theoretical study of the electrostatic and steric effects on the spectroscopic characteristics of the metal-ligand unit of heme proteins. 2. C-O vibrational frequencies, 17O isotropic chemical shifts, and nuclear quadrupole coupling constants.

Authors:  B Kushkuley; S S Stavrov
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

8.  Connection between the taxonomic substates and protonation of histidines 64 and 97 in carbonmonoxy myoglobin.

Authors:  J D Müller; B H McMahon; E Y Chien; S G Sligar; G U Nienhaus
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

9.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28

10.  Infrared Study of Carbon Monoxide Migration among Internal Cavities of Myoglobin Mutant L29W.

Authors:  G U Nienhaus; K Nienhaus
Journal:  J Biol Phys       Date:  2002-06       Impact factor: 1.365

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