Literature DB >> 8743684

Applying motif and profile searches.

P Bork1, T J Gibson.   

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Year:  1996        PMID： 8743684     DOI： 10.1016/s0076-6879(96)66013-3

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  34 in total

1.  Comparison of sequence profiles. Strategies for structural predictions using sequence information.

Authors:  L Rychlewski; L Jaroszewski; W Li; A Godzik
Journal:  Protein Sci       Date:  2000-02       Impact factor: 6.725

2.  Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Authors:  T Dandekar; M Huynen; J T Regula; B Ueberle; C U Zimmermann; M A Andrade; T Doerks; L Sánchez-Pulido; B Snel; M Suyama; Y P Yuan; R Herrmann; P Bork
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

3.  Comparative homology agreement search: an effective combination of homology-search methods.

Authors:  Intikhab Alam; Andreas Dress; Marc Rehmsmeier; Georg Fuellen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-14       Impact factor: 11.205

4.  Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases.

Authors:  B Al-Lazikani; F B Sheinerman; B Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

5.  The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues.

Authors:  P Bork; N P Brown; H Hegyi; J Schultz
Journal:  Protein Sci       Date:  1996-07       Impact factor: 6.725

6.  PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames.

Authors:  E Birney; J D Thompson; T J Gibson
Journal:  Nucleic Acids Res       Date:  1996-07-15       Impact factor: 16.971

7.  SMART, a simple modular architecture research tool: identification of signaling domains.

Authors:  J Schultz; F Milpetz; P Bork; C P Ponting
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

Review 8.  Janus kinases and focal adhesion kinases play in the 4.1 band: a superfamily of band 4.1 domains important for cell structure and signal transduction.

Authors:  J A Girault; G Labesse; J P Mornon; I Callebaut
Journal:  Mol Med       Date:  1998-12       Impact factor: 6.354

9.  Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome of Mycobacterium tuberculosis H37Rv.

Authors:  Seema Namboori; Natasha Mhatre; Sentivel Sujatha; Narayanaswamy Srinivasan; Shashi Bhushan Pandit
Journal:  J Biosci       Date:  2004-09       Impact factor: 1.826

10.  Novel domains and orthologues of eukaryotic transcription elongation factors.

Authors:  Chris P Ponting
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971
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