Literature DB >> 8742745

Automated software package for icosahedral virus reconstruction.

J A Lawton1, B V Venkataram Prasad.   

Abstract

The three-dimensional reconstruction of icosahedral viruses from electron micrograph images has become an important tool for understanding virus structure, function, and pathogenesis. We have developed an integrated suite of software programs to automate most of the operations involved in producing these reconstructions from EM images. Our package combines the analytical capabilities of preexisting algorithms together with approaches we have developed to produce an interactive working environment which enhances the efficiency and usefulness of this approach to the structural analysis of icosahedral viruses.

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Year:  1996        PMID: 8742745     DOI: 10.1006/jsbi.1996.0032

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  19 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Identification of additional coat-scaffolding interactions in a bacteriophage P22 mutant defective in maturation.

Authors:  P A Thuman-Commike; B Greene; J Jakana; A McGough; P E Prevelige; W Chiu
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

3.  The reversible condensation and expansion of the rotavirus genome.

Authors:  J B Pesavento; J A Lawton; M E Estes; B V Venkataram Prasad
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

4.  Trypsin cleavage stabilizes the rotavirus VP4 spike.

Authors:  S E Crawford; S K Mukherjee; M K Estes; J A Lawton; A L Shaw; R F Ramig; B V Prasad
Journal:  J Virol       Date:  2001-07       Impact factor: 5.103

5.  Mechanism of scaffolding-directed virus assembly suggested by comparison of scaffolding-containing and scaffolding-lacking P22 procapsids.

Authors:  P A Thuman-Commike; B Greene; J A Malinski; M Burbea; A McGough; W Chiu; P E Prevelige
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

6.  Structures of rotavirus reassortants demonstrate correlation of altered conformation of the VP4 spike and expression of unexpected VP4-associated phenotypes.

Authors:  Joseph B Pesavento; Angela M Billingsley; Ed J Roberts; Robert F Ramig; B V Venkataram Prasad
Journal:  J Virol       Date:  2003-03       Impact factor: 5.103

7.  A single mutation in the carboxy terminus of reovirus outer-capsid protein sigma 3 confers enhanced kinetics of sigma 3 proteolysis, resistance to inhibitors of viral disassembly, and alterations in sigma 3 structure.

Authors:  Gregory J Wilson; Emma L Nason; Charles S Hardy; Daniel H Ebert; J Denise Wetzel; B V Venkataram Prasad; Terence S Dermody
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

8.  Structural rearrangements in the membrane penetration protein of a non-enveloped virus.

Authors:  Philip R Dormitzer; Emma B Nason; B V V Prasad; Stephen C Harrison
Journal:  Nature       Date:  2004-08-26       Impact factor: 49.962

9.  Comparative structural analysis of transcriptionally competent and incompetent rotavirus-antibody complexes.

Authors:  J A Lawton; M K Estes; B V Prasad
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

10.  Interactions between the inner and outer capsids of bluetongue virus.

Authors:  Emma L Nason; Rosalba Rothagel; Sharmila K Mukherjee; Alak Kanti Kar; Mario Forzan; B V Venkataram Prasad; Polly Roy
Journal:  J Virol       Date:  2004-08       Impact factor: 5.103

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