Literature DB >> 8742723

IVE (Image Visualization Environment): a software platform for all three-dimensional microscopy applications.

H Chen1, D D Hughes, T A Chan, J W Sedat, D A Agard.   

Abstract

IVE (Image Visualization Environment) is a software platform designed from the outset to handle all aspects of modern computerized multidimensional microscopy. This platform provides users with an execution environment in which 5D data (XYZ, wavelength, and time) can be easily manipulated for the purpose of data collection, processing, display, and analysis. During the entire process, powerful data display functions are readily available for extracting complicated three-dimensional information through data visualization. By employing both the shared memory and multitasking features of the UNIX operation system, individual functions can be implemented as separate programs, and multiple programs can access the same data pool simultaneously. This enables users to combine the functionalities of different programs to facilitate each unique data analysis task. Furthermore, by defining an appropriate program execution model, commonly shared functional components such as data display, data I/O and user interface, etc. can be implemented using simple IVE library calls. This dramatically reduces the program development time and ensures consistency throughout the entire software system. As a result, users can quickly master the microscopy software system and new functions can be easily integrated, as different functional requirements arise for different research projects.

Mesh:

Year:  1996        PMID: 8742723     DOI: 10.1006/jsbi.1996.0010

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  67 in total

1.  Visual reality: using computer reconstruction and animation to magnify the microscopist's perception.

Authors:  W A Mohler
Journal:  Mol Biol Cell       Date:  1999-10       Impact factor: 4.138

2.  Folding of an isolated ribonuclease H core fragment.

Authors:  A K Chamberlain; K F Fischer; D Reardon; T M Handel; A S Marqusee
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

Review 3.  Principles and practices of laser scanning confocal microscopy.

Authors:  S W Paddock
Journal:  Mol Biotechnol       Date:  2000-10       Impact factor: 2.695

4.  Rotamer strain as a determinant of protein structural specificity.

Authors:  G A Lazar; E C Johnson; J R Desjarlais; T M Handel
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Polarization of chemoattractant receptor signaling during neutrophil chemotaxis.

Authors:  G Servant; O D Weiner; P Herzmark; T Balla; J W Sedat; H R Bourne
Journal:  Science       Date:  2000-02-11       Impact factor: 47.728

6.  Spatial control of actin polymerization during neutrophil chemotaxis.

Authors:  O D Weiner; G Servant; M D Welch; T J Mitchison; J W Sedat; H R Bourne
Journal:  Nat Cell Biol       Date:  1999-06       Impact factor: 28.824

7.  Directed motion of telomeres in the formation of the meiotic bouquet revealed by time course and simulation analysis.

Authors:  Peter M Carlton; Carrie R Cowan; W Zacheus Cande
Journal:  Mol Biol Cell       Date:  2003-05-03       Impact factor: 4.138

8.  Spatial and temporal regulation of Condensins I and II in mitotic chromosome assembly in human cells.

Authors:  Takao Ono; Yuda Fang; David L Spector; Tatsuya Hirano
Journal:  Mol Biol Cell       Date:  2004-05-14       Impact factor: 4.138

9.  Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolution.

Authors:  Bayly S Wheeler; Erika Anderson; Christian Frøkjær-Jensen; Qian Bian; Erik Jorgensen; Barbara J Meyer
Journal:  Elife       Date:  2016-08-30       Impact factor: 8.140

10.  Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.

Authors:  Katjuša Brejc; Qian Bian; Satoru Uzawa; Bayly S Wheeler; Erika C Anderson; David S King; Philip J Kranzusch; Christine G Preston; Barbara J Meyer
Journal:  Cell       Date:  2017-08-31       Impact factor: 41.582

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