Literature DB >> 8710894

The notion of the Cambrian pananimalia genome.

S Ohno1.   

Abstract

The toil by photosynthesizing cyanobacteria and blue-green algae of nearly three billion years appeared to have finally resulted in the sufficient accumulation of molecular oxygen. So, the stage was set for the emergence, at the ocean bottom, of diverse animals that were consumers of molecular oxygen. It now appears that this Cambrian explosion, during which nearly all the extant animal phyla have emerged, was of an astonishingly short duration, lasting only 6-10 million years. Inasmuch as only a 1% DNA base sequence change is expected in 10 million years under the standard spontaneous mutation rate, I propose that all those diverse animals of the early Cambrian period, some 550 million years ago, were endowed with nearly identical genomes, with differential usage of the same set of genes accounting for the extreme diversities of body forms. Some of the more pertinent genes that are thought to be included in the Cambrian pananimalia genome are as follows. (i) A gene for lysyloxidase that, in the presence of molecular oxygen, crosslinked collagen triple helices to produce ligaments and tendons, thus contributing to the stout bodies of the Cambrian animals. (ii) Genes for hemoglobin; these internal transporters of molecular oxygen are today seen sporadically in members of diverse animal phyla. (iii) The Pax-6 gene for eye formation; the eyes of a ribbon worm to a human are organized by this gene. In animals without eyes, the same gene organizes other sensory systems and organs. (iv) A series of Hox genes for the anterior-posterior (cranio-caudal) body plans: these genes are also present in all phyla of the kingdom Animalia.

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Year:  1996        PMID: 8710894      PMCID: PMC38696          DOI: 10.1073/pnas.93.16.8475

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  The ediacarian period and syste: metazoa inherit the Earth.

Authors:  P Cloud; M F Glaessner
Journal:  Science       Date:  1982-08-27       Impact factor: 47.728

2.  Burgess shale faunas and the cambrian explosion.

Authors:  S C Morris
Journal:  Science       Date:  1989-10-20       Impact factor: 47.728

3.  DNA-binding and transactivation properties of Pax-6: three amino acids in the paired domain are responsible for the different sequence recognition of Pax-6 and BSAP (Pax-5).

Authors:  T Czerny; M Busslinger
Journal:  Mol Cell Biol       Date:  1995-05       Impact factor: 4.272

4.  Archetypal organization of the amphioxus Hox gene cluster.

Authors:  J Garcia-Fernández; P W Holland
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

Review 5.  Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse.

Authors:  L G Lundin
Journal:  Genomics       Date:  1993-04       Impact factor: 5.736

6.  Mice with targeted disruptions in the paralogous genes hoxa-3 and hoxd-3 reveal synergistic interactions.

Authors:  B G Condie; M R Capecchi
Journal:  Nature       Date:  1994-07-28       Impact factor: 49.962

7.  Specification of sense-organ identity by a Caenorhabditis elegans Pax-6 homologue.

Authors:  Y Zhang; S W Emmons
Journal:  Nature       Date:  1995-09-07       Impact factor: 49.962

8.  Specification of anteroposterior cell fates in Caenorhabditis elegans by Drosophila Hox proteins.

Authors:  C P Hunter; C Kenyon
Journal:  Nature       Date:  1995-09-21       Impact factor: 49.962

9.  Human Hox-4.2 and Drosophila deformed encode similar regulatory specificities in Drosophila embryos and larvae.

Authors:  N McGinnis; M A Kuziora; W McGinnis
Journal:  Cell       Date:  1990-11-30       Impact factor: 41.582

10.  Hox genes and the diversification of insect and crustacean body plans.

Authors:  M Averof; M Akam
Journal:  Nature       Date:  1995-08-03       Impact factor: 49.962

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  9 in total

1.  Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi.

Authors:  D Y Wang; S Kumar; S B Hedges
Journal:  Proc Biol Sci       Date:  1999-01-22       Impact factor: 5.349

2.  Phylogenetic analysis of vertebrate fibrillar collagen locates the position of zebrafish alpha3(I) and suggests an evolutionary link between collagen alpha chains and hox clusters.

Authors:  Ghislaine Morvan-Dubois; Dominique Le Guellec; Robert Garrone; Louise Zylberberg; Laure Bonnaud
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

3.  Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.

Authors:  Sankar Subramanian; Sudhir Kumar
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

4.  An early and anaerobic scenario for the transition to undifferentiated multicellularity.

Authors:  Juan Carlos Aledo
Journal:  J Mol Evol       Date:  2008-07-15       Impact factor: 2.395

5.  Early origin of the bilaterian developmental toolkit.

Authors:  Douglas H Erwin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-08-12       Impact factor: 6.237

Review 6.  The reason for as well as the consequence of the Cambrian explosion in animal evolution.

Authors:  S Ohno
Journal:  J Mol Evol       Date:  1997       Impact factor: 2.395

7.  Unexpected homology between inducible cell wall protein QID74 of filamentous fungi and BR3 salivary protein of the insect Chironomus.

Authors:  M Rey; S Ohno; J A Pintor-Toro; A Llobell; T Benitez
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

8.  Bushes in the tree of life.

Authors:  Antonis Rokas; Sean B Carroll
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

9.  Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:  Tadashi Imanishi; Takeshi Itoh; Yutaka Suzuki; Claire O'Donovan; Satoshi Fukuchi; Kanako O Koyanagi; Roberto A Barrero; Takuro Tamura; Yumi Yamaguchi-Kabata; Motohiko Tanino; Kei Yura; Satoru Miyazaki; Kazuho Ikeo; Keiichi Homma; Arek Kasprzyk; Tetsuo Nishikawa; Mika Hirakawa; Jean Thierry-Mieg; Danielle Thierry-Mieg; Jennifer Ashurst; Libin Jia; Mitsuteru Nakao; Michael A Thomas; Nicola Mulder; Youla Karavidopoulou; Lihua Jin; Sangsoo Kim; Tomohiro Yasuda; Boris Lenhard; Eric Eveno; Yoshiyuki Suzuki; Chisato Yamasaki; Jun-ichi Takeda; Craig Gough; Phillip Hilton; Yasuyuki Fujii; Hiroaki Sakai; Susumu Tanaka; Clara Amid; Matthew Bellgard; Maria de Fatima Bonaldo; Hidemasa Bono; Susan K Bromberg; Anthony J Brookes; Elspeth Bruford; Piero Carninci; Claude Chelala; Christine Couillault; Sandro J de Souza; Marie-Anne Debily; Marie-Dominique Devignes; Inna Dubchak; Toshinori Endo; Anne Estreicher; Eduardo Eyras; Kaoru Fukami-Kobayashi; Gopal R Gopinath; Esther Graudens; Yoonsoo Hahn; Michael Han; Ze-Guang Han; Kousuke Hanada; Hideki Hanaoka; Erimi Harada; Katsuyuki Hashimoto; Ursula Hinz; Momoki Hirai; Teruyoshi Hishiki; Ian Hopkinson; Sandrine Imbeaud; Hidetoshi Inoko; Alexander Kanapin; Yayoi Kaneko; Takeya Kasukawa; Janet Kelso; Paul Kersey; Reiko Kikuno; Kouichi Kimura; Bernhard Korn; Vladimir Kuryshev; Izabela Makalowska; Takashi Makino; Shuhei Mano; Regine Mariage-Samson; Jun Mashima; Hideo Matsuda; Hans-Werner Mewes; Shinsei Minoshima; Keiichi Nagai; Hideki Nagasaki; Naoki Nagata; Rajni Nigam; Osamu Ogasawara; Osamu Ohara; Masafumi Ohtsubo; Norihiro Okada; Toshihisa Okido; Satoshi Oota; Motonori Ota; Toshio Ota; Tetsuji Otsuki; Dominique Piatier-Tonneau; Annemarie Poustka; Shuang-Xi Ren; Naruya Saitou; Katsunaga Sakai; Shigetaka Sakamoto; Ryuichi Sakate; Ingo Schupp; Florence Servant; Stephen Sherry; Rie Shiba; Nobuyoshi Shimizu; Mary Shimoyama; Andrew J Simpson; Bento Soares; Charles Steward; Makiko Suwa; Mami Suzuki; Aiko Takahashi; Gen Tamiya; Hiroshi Tanaka; Todd Taylor; Joseph D Terwilliger; Per Unneberg; Vamsi Veeramachaneni; Shinya Watanabe; Laurens Wilming; Norikazu Yasuda; Hyang-Sook Yoo; Marvin Stodolsky; Wojciech Makalowski; Mitiko Go; Kenta Nakai; Toshihisa Takagi; Minoru Kanehisa; Yoshiyuki Sakaki; John Quackenbush; Yasushi Okazaki; Yoshihide Hayashizaki; Winston Hide; Ranajit Chakraborty; Ken Nishikawa; Hideaki Sugawara; Yoshio Tateno; Zhu Chen; Michio Oishi; Peter Tonellato; Rolf Apweiler; Kousaku Okubo; Lukas Wagner; Stefan Wiemann; Robert L Strausberg; Takao Isogai; Charles Auffray; Nobuo Nomura; Takashi Gojobori; Sumio Sugano
Journal:  PLoS Biol       Date:  2004-04-20       Impact factor: 8.029

  9 in total

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