Literature DB >> 8672720

Recent developments in the theory of protein folding: searching for the global energy minimum.

H A Scheraga1.   

Abstract

Statistical mechanical theories and computer simulation are being used to gain an understanding of the fundamental features of protein folding. A major obstacle in the computation of protein structures is the multiple-minima problem arising from the existence of many local minima in the multidimensional energy landscape of the protein. This problem has been surmounted for small open-chain and cyclic peptides, and for regular-repeating sequences of models of fibrous proteins. Progress is being made in resolving this problem for globular proteins.

Mesh:

Substances:

Year:  1996        PMID: 8672720     DOI: 10.1016/0301-4622(95)00126-3

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  12 in total

1.  Recent improvements in prediction of protein structure by global optimization of a potential energy function.

Authors:  J Pillardy; C Czaplewski; A Liwo; J Lee; D R Ripoll; R Kaźmierkiewicz; S Oldziej; W J Wedemeyer; K D Gibson; Y A Arnautova; J Saunders; Y J Ye; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

2.  Kinetics and thermodynamics of protein adsorption: a generalized molecular theoretical approach.

Authors:  F Fang; I Szleifer
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

3.  Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

Authors:  J Lee; A Liwo; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

4.  Protein structure prediction by global optimization of a potential energy function.

Authors:  A Liwo; J Lee; D R Ripoll; J Pillardy; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

5.  Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.

Authors:  Jhih-Wei Chu; Gregory A Voth
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

Review 6.  Evolutionary algorithms in computer-aided molecular design.

Authors:  D E Clark; D R Westhead
Journal:  J Comput Aided Mol Des       Date:  1996-08       Impact factor: 3.686

7.  On the thermodynamic hypothesis of protein folding.

Authors:  S Govindarajan; R A Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-12       Impact factor: 11.205

8.  Protein adsorption on surfaces with grafted polymers: a theoretical approach.

Authors:  I Szleifer
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

Review 9.  RNA and protein 3D structure modeling: similarities and differences.

Authors:  Kristian Rother; Magdalena Rother; Michał Boniecki; Tomasz Puton; Janusz M Bujnicki
Journal:  J Mol Model       Date:  2011-01-22       Impact factor: 1.810

10.  Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins.

Authors:  B Jayaram; Kumkum Bhushan; Sandhya R Shenoy; Pooja Narang; Surojit Bose; Praveen Agrawal; Debashish Sahu; Vidhu Pandey
Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.