Literature DB >> 8665839

A left-hand beta-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila.

C Kisker1, H Schindelin, B E Alber, J G Ferry, D C Rees.   

Abstract

A carbonic anhydrase from the thermophilic archaeon Methanosarcina thermophila that exhibits no significant sequence similarity to known carbonic anhydrases has recently been characterized. Here we present the structure of this enzyme, which adopts a left-handed parallel beta-helix fold. This fold is of particular interest since it contains only left-handed crossover connections between the parallel beta-strands, which so far have been observed very infrequently. The active form of the enzyme is a trimer with three zinc-containing active sites, each located at the interface between two monomers. While the arrangement of active site groups differs between this enzyme and the carbonic anhydrases from higher vertebrates, there are structural similarities in the zinc coordination environment, suggestive of convergent evolution dictated by the chemical requirements for catalysis of the same reaction. Based on sequence similarities, the structure of this enzyme is the prototype of a new class of carbonic anhydrases with representatives in all three phylogenetic domains of life.

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Year:  1996        PMID: 8665839      PMCID: PMC450161     

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  20 in total

1.  A gene homologous to chloroplast carbonic anhydrase (icfA) is essential to photosynthetic carbon dioxide fixation by Synechococcus PCC7942.

Authors:  H Fukuzawa; E Suzuki; Y Komukai; S Miyachi
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-15       Impact factor: 11.205

2.  A left-handed parallel beta helix in the structure of UDP-N-acetylglucosamine acyltransferase.

Authors:  C R Raetz; S L Roderick
Journal:  Science       Date:  1995-11-10       Impact factor: 47.728

3.  On the conformation of proteins: the handedness of the connection between parallel beta-strands.

Authors:  M J Sternberg; J M Thornton
Journal:  J Mol Biol       Date:  1977-02-25       Impact factor: 5.469

4.  Structural analysis of the zinc hydroxide-Thr-199-Glu-106 hydrogen-bond network in human carbonic anhydrase II.

Authors:  Y Xue; A Liljas; B H Jonsson; S Lindskog
Journal:  Proteins       Date:  1993-09

5.  A carbonic anhydrase from the archaeon Methanosarcina thermophila.

Authors:  B E Alber; J G Ferry
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

Review 6.  Human carbonic anhydrases and carbonic anhydrase deficiencies.

Authors:  W S Sly; P Y Hu
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

7.  Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes.

Authors:  K Håkansson; M Carlsson; L A Svensson; A Liljas
Journal:  J Mol Biol       Date:  1992-10-20       Impact factor: 5.469

8.  Structure and function of a virally encoded fungal toxin from Ustilago maydis: a fungal and mammalian Ca2+ channel inhibitor.

Authors:  F Gu; A Khimani; S G Rane; W H Flurkey; R F Bozarth; T J Smith
Journal:  Structure       Date:  1995-08-15       Impact factor: 5.006

9.  The structure of Bacillus subtilis pectate lyase in complex with calcium.

Authors:  R Pickersgill; J Jenkins; G Harris; W Nasser; J Robert-Baudouy
Journal:  Nat Struct Biol       Date:  1994-10

10.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  55 in total

1.  A wheel invented three times. The molecular structures of the three carbonic anhydrases.

Authors:  A Liljas; M Laurberg
Journal:  EMBO Rep       Date:  2000-07       Impact factor: 8.807

2.  Carbonic anhydrase is an ancient enzyme widespread in prokaryotes.

Authors:  K S Smith; C Jakubzick; T S Whittam; J G Ferry
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

3.  Beta-helix core packing within the triple-stranded oligomerization domain of the P22 tailspike.

Authors:  J F Kreisberg; S D Betts; J King
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

Review 4.  Sedimentation equilibrium: a valuable tool to study homologous and heterogeneous interactions of proteins or proteins and nucleic acids.

Authors:  Joachim Behlke; Otto Ristau
Journal:  Eur Biophys J       Date:  2003-05-29       Impact factor: 1.733

5.  Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation.

Authors:  Hidemasa Kondo; Yuichi Hanada; Hiroshi Sugimoto; Tamotsu Hoshino; Christopher P Garnham; Peter L Davies; Sakae Tsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

6.  Crystal structure of potato tuber ADP-glucose pyrophosphorylase.

Authors:  Xiangshu Jin; Miguel A Ballicora; Jack Preiss; James H Geiger
Journal:  EMBO J       Date:  2005-02-03       Impact factor: 11.598

7.  Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I.

Authors:  Mariano Perales; Gustavo Parisi; María Silvina Fornasari; Alejandro Colaneri; Fernando Villarreal; Nahuel González-Schain; Julián Echave; Diego Gómez-Casati; Hans-Peter Braun; Alejandro Araya; Eduardo Zabaleta
Journal:  Plant Mol Biol       Date:  2005-04-07       Impact factor: 4.076

8.  A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria.

Authors:  Swan S-W Cot; Anthony K-C So; George S Espie
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

9.  Crystal structure and catalytic mechanism of PglD from Campylobacter jejuni.

Authors:  Nelson B Olivier; Barbara Imperiali
Journal:  J Biol Chem       Date:  2008-07-30       Impact factor: 5.157

10.  Intracellular beta-carbonic anhydrase of the unicellular green alga Coccomyxa. Cloning of the cdna and characterization of the functional enzyme overexpressed in Escherichia coli.

Authors:  T Hiltonen; H Björkbacka; C Forsman; A K Clarke; G Samuelsson
Journal:  Plant Physiol       Date:  1998-08       Impact factor: 8.340

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