Literature DB >> 8660982

Computer-assisted search for sites of nuclear matrix attachment.

J A Kramer1, G B Singh, S A Krawetz.   

Abstract

This communication describes a useful approach for assessing the significance of the occurrence of multiple motifs within defined segments of the genome. Regions of potential biological importance are identified using various sequence motifs, and then the results are displayed as their cumulative statistically weighted distribution. We illustrate the utility of this strategy to the search for known nuclear matrix-associated regions by its application to the human beta-globin and other loci.

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Year:  1996        PMID: 8660982     DOI: 10.1006/geno.1996.0198

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  11 in total

1.  Conserved characteristics of heterochromatin-forming DNA at the 15q11-q13 imprinting center.

Authors:  J M Greally; T A Gray; J M Gabriel; L Song; S Zemel; R D Nicholls
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Matrix attachment region (MAR) properties and abnormal expansion of AT island minisatellites in FRA16B fragile sites in leukemic CEM cells.

Authors:  Jennifer A Jackson; Alex V Trevino; Maryanne C Herzig; Terence S Herman; Jan M Woynarowski
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  Decondensing the protamine domain for transcription.

Authors:  Rui Pires Martins; Stephen A Krawetz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-01       Impact factor: 11.205

4.  Nuclear matrix attachment regions of human papillomavirus type 16 point toward conservation of these genomic elements in all genital papillomaviruses.

Authors:  S H Tan; D Bartsch; E Schwarz; H U Bernard
Journal:  J Virol       Date:  1998-05       Impact factor: 5.103

5.  Towards understanding the epigenetics of transcription by chromatin structure and the nuclear matrix.

Authors:  Rui Pires Martins; Stephen A Krawetz
Journal:  Gene Ther Mol Biol       Date:  2005

6.  Matrix-attachment regions in the mouse chromosome 7F imprinted domain.

Authors:  J M Greally; M E Guinness; J McGrath; S Zemel
Journal:  Mamm Genome       Date:  1997       Impact factor: 2.957

7.  Mathematical model to predict regions of chromatin attachment to the nuclear matrix.

Authors:  G B Singh; J A Kramer; S A Krawetz
Journal:  Nucleic Acids Res       Date:  1997-04-01       Impact factor: 16.971

8.  Functional analysis of two matrix attachment region (MAR) elements in transgenic maize plants.

Authors:  Lyudmila Sidorenko; Wesley Bruce; Sheila Maddock; Laura Tagliani; Xianggan Li; Michael Daniels; Thomas Peterson
Journal:  Transgenic Res       Date:  2003-04       Impact factor: 2.788

9.  DNA bending in the replication zone of the C3 DNA puff amplicon of Rhynchosciara americana (Diptera: Sciaridae).

Authors:  Adriana Fiorini; Fabiana Souza de Gouveia; Maria Albertina Miranda de Soares; Ann Jacob Stocker; Ricardo Rodrigues Ciferri; Maria Aparecida Fernandez
Journal:  Mol Biol Rep       Date:  2006-03       Impact factor: 2.742

10.  Large-scale organization of ribosomal DNA chromatin is regulated by Tip5.

Authors:  Karina Zillner; Michael Filarsky; Katrin Rachow; Michael Weinberger; Gernot Längst; Attila Németh
Journal:  Nucleic Acids Res       Date:  2013-04-10       Impact factor: 16.971

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