Literature DB >> 8654409

In vitro protein folding by ribosomes from Escherichia coli, wheat germ and rat liver: the role of the 50S particle and its 23S rRNA.

B Das1, S Chattopadhyay, A K Bera, C Dasgupta.   

Abstract

Ribosomes from a number of prokaryotic and eukaryotic sources (e.g. Escherichia coli, wheat germ and rat liver) can refold a number of enzymes which are denatured with guanidine/HC1 prior to incubation with ribosomes. In this report, we present our observations on the refolding of denatured lactate dehydrogenase from rabbit muscle and glucose-6-phosphate dehydrogenase from baker's yeast by ribosomes from E. coli, wheat germ and rat liver. The protein-folding activity of E. coli ribosomes was found to be present in 50S particles and in 23S rRNA. The 30S particle or 16S rRNA did not show any protein-folding activity. The protein-folding activity of 23S rRNA may depend on its tertiary conformation. Loss of tertiary structure, by incubation with low concentrations of EDTA, inhibited the protein-folding activity of 23S rRNA. This low concentration of EDTA had no effect on folding of the denatured enzymes by themselves.

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Year:  1996        PMID: 8654409     DOI: 10.1111/j.1432-1033.1996.00613.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  28 in total

1.  Involvement of mitochondrial ribosomal proteins in ribosomal RNA-mediated protein folding.

Authors:  Anindita Das; Jaydip Ghosh; Arpita Bhattacharya; Dibyendu Samanta; Debasis Das; Chanchal Das Gupta
Journal:  J Biol Chem       Date:  2011-10-21       Impact factor: 5.157

2.  Cotranslational folding increases GFP folding yield.

Authors:  Krastyu G Ugrinov; Patricia L Clark
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Protein folding by domain V of Escherichia coli 23S rRNA: specificity of RNA-protein interactions.

Authors:  Dibyendu Samanta; Debashis Mukhopadhyay; Saheli Chowdhury; Jaydip Ghosh; Saumen Pal; Arunima Basu; Arpita Bhattacharya; Anindita Das; Debasis Das; Chanchal DasGupta
Journal:  J Bacteriol       Date:  2008-02-29       Impact factor: 3.490

4.  Reactivation of denatured proteins by domain V of bacterial 23S rRNA.

Authors:  D Pal; S Chattopadhyay; S Chandra; D Sarkar; A Chakraborty; C Das Gupta
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  The path of the growing peptide chain through the 23S rRNA in the 50S ribosomal subunit; a comparative cross-linking study with three different peptide families.

Authors:  K M Choi; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

6.  Identical RNA-protein interactions in vivo and in vitro and a scheme of folding the newly synthesized proteins by ribosomes.

Authors:  Debasis Das; Dibyendu Samanta; Salman Hasan; Anindita Das; Arpita Bhattacharya; Santanu Dasgupta; Abhijit Chakrabarti; Pradip Ghorai; Chanchal Das Gupta
Journal:  J Biol Chem       Date:  2012-08-29       Impact factor: 5.157

7.  M1 RNA is important for the in-cell solubility of its cognate C5 protein: Implications for RNA-mediated protein folding.

Authors:  Ahyun Son; Seong Il Choi; Gyoonhee Han; Baik L Seong
Journal:  RNA Biol       Date:  2015-10-30       Impact factor: 4.652

8.  23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding.

Authors:  Suparna Chandra Sanyal; Saumen Pal; Saheli Chowdhury; Chanchal DasGupta; Saheli Chaudhuri
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

9.  Development of high-yield autofluorescent protein microarrays using hybrid cell-free expression with combined Escherichia coli S30 and wheat germ extracts.

Authors:  Xristo Zárate; David C Henderson; Keenan C Phillips; April D Lake; David W Galbraith
Journal:  Proteome Sci       Date:  2010-06-15       Impact factor: 2.480

10.  The antiprion compound 6-aminophenanthridine inhibits the protein folding activity of the ribosome by direct competition.

Authors:  Yanhong Pang; Sriram Kurella; Cécile Voisset; Dibyendu Samanta; Debapriya Banerjee; Ariane Schabe; Chanchal Das Gupta; Hervé Galons; Marc Blondel; Suparna Sanyal
Journal:  J Biol Chem       Date:  2013-05-14       Impact factor: 5.157

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