Literature DB >> 8634904

Constructing lattice models of protein chains with side groups.

B A Reva1, D S Rykunov, A J Olson, A V Finkelstein.   

Abstract

An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 8634904     DOI: 10.1089/cmb.1995.2.527

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  5 in total

1.  Ideal architecture of residue packing and its observation in protein structures.

Authors:  G Raghunathan; R L Jernigan
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

2.  Producing high-accuracy lattice models from protein atomic coordinates including side chains.

Authors:  Martin Mann; Rhodri Saunders; Cameron Smith; Rolf Backofen; Charlotte M Deane
Journal:  Adv Bioinformatics       Date:  2012-08-15

3.  Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.

Authors:  Christian Schaefer; Avner Schlessinger; Burkhard Rost
Journal:  Bioinformatics       Date:  2010-01-16       Impact factor: 6.937

4.  LocalMove: computing on-lattice fits for biopolymers.

Authors:  Y Ponty; R Istrate; E Porcelli; P Clote
Journal:  Nucleic Acids Res       Date:  2008-06-13       Impact factor: 16.971

5.  How good are simplified models for protein structure prediction?

Authors:  Swakkhar Shatabda; M A Hakim Newton; Mahmood A Rashid; Duc Nghia Pham; Abdul Sattar
Journal:  Adv Bioinformatics       Date:  2014-04-29
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.