Literature DB >> 8634903

Hen's teeth and whale's feet: generalized characters and their compatibility.

C Benham1, S Kannan, M Paterson, T Warnow.   

Abstract

We propose a new model of computation for deriving phylogenetic trees based upon a generalization of qualitative characters. The model we propose is based upon recent experimental research in molecular biology. We show that the general case of determining perfect compatibility of generalized ordered characters is an NP-complete problem, but can be solved in polynomial time for a special case.

Mesh:

Year:  1995        PMID: 8634903     DOI: 10.1089/cmb.1995.2.515

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  3 in total

1.  Explaining evolution via constrained persistent perfect phylogeny.

Authors:  Paola Bonizzoni; Anna Paola Carrieri; Gianluca Della Vedova; Gabriella Trucco
Journal:  BMC Genomics       Date:  2014-10-17       Impact factor: 3.969

2.  gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.

Authors:  Simone Ciccolella; Mauricio Soto Gomez; Murray D Patterson; Gianluca Della Vedova; Iman Hajirasouliha; Paola Bonizzoni
Journal:  BMC Bioinformatics       Date:  2020-12-09       Impact factor: 3.169

3.  Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices.

Authors:  Salem Malikić; Farid Rashidi Mehrabadi; Erfan Sadeqi Azer; Mohammad Haghir Ebrahimabadi; Suleyman Cenk Sahinalp
Journal:  J Comput Biol       Date:  2021-07-22       Impact factor: 1.549

  3 in total

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