Literature DB >> 8626651

Bacteriophage T7 DNA ligase. Overexpression, purification, crystallization, and characterization.

A J Doherty1, S R Ashford, H S Subramanya, D B Wigley.   

Abstract

The bacteriophage T7 DNA ligase gene was amplified using polymerase chain reaction-based methods and cloned into a T7 promoter-based expression vector. The protein was overexpressed to greater than 15% of total soluble protein and purified to homogeneity, yielding 60-70 mg of protein per liter of bacterial culture. An initial physical and biochemical characterization of the enzyme reveals that it exists as a monomer and can ligate nicked, cohesive, and blunt-ended DNA fragments. Inhibition of the enzyme activity by a nonhydrolyzable ATP analogue was also investigated. The enzyme has been crystallized from methoxypolyethylene glycol. The crystals are of the orthorhombic space group P2(1)2(1)2 and diffract to 2.6 A. The unit cell dimensions are a = 66.1 A, b = 87.6 A, and c = 78.6 A, with one monomer in the asymmetric unit (Vm = 2.77 A3/Da). This is the first member of the DNA ligase family of enzymes to be crystallized.

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Year:  1996        PMID: 8626651     DOI: 10.1074/jbc.271.19.11083

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  15 in total

1.  A DNA ligase from a hyperthermophilic archaeon with unique cofactor specificity.

Authors:  M Nakatani; S Ezaki; H Atomi; T Imanaka
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

2.  Binding of nucleotides by T4 DNA ligase and T4 RNA ligase: optical absorbance and fluorescence studies.

Authors:  A V Cherepanov; S de Vries
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Characterization of an ATP-dependent type I DNA ligase from Arabidopsis thaliana.

Authors:  Y Q Wu; B Hohn; A Ziemienowic
Journal:  Plant Mol Biol       Date:  2001-05       Impact factor: 4.076

4.  Optimised ligation of oligonucleotides by thermal ligases: comparison of Thermus scotoductus and Rhodothermus marinus DNA ligases to other thermophilic ligases.

Authors:  J N Housby; S H Thorbjarnardóttir; Z O Jónsson; E M Southern
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

5.  Characterization of an ATP-dependent DNA ligase from the thermophilic archaeon Methanobacterium thermoautotrophicum.

Authors:  V Sriskanda; Z Kelman; J Hurwitz; S Shuman
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

6.  Electrostatic fingerprints of catalytically active amino acids in enzymes.

Authors:  Suhasini M Iyengar; Kelly K Barnsley; Rholee Xu; Aleksandr Prystupa; Mary Jo Ondrechen
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

7.  Ribonucleolytic resection is required for repair of strand displaced nonhomologous end-joining intermediates.

Authors:  Edward J Bartlett; Nigel C Brissett; Aidan J Doherty
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-13       Impact factor: 11.205

8.  Nonhomologous end joining of complex DNA double-strand breaks with proximal thymine glycol and interplay with base excision repair.

Authors:  Mohammed Almohaini; Sri Lakshmi Chalasani; Duaa Bafail; Konstantin Akopiants; Tong Zhou; Steven M Yannone; Dale A Ramsden; Matthew C T Hartman; Lawrence F Povirk
Journal:  DNA Repair (Amst)       Date:  2016-03-24

Review 9.  Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives.

Authors:  Timothy C Mueser; Jennifer M Hinerman; Juliette M Devos; Ryan A Boyer; Kandace J Williams
Journal:  Virol J       Date:  2010-12-03       Impact factor: 4.099

10.  Remote homology and the functions of metagenomic dark matter.

Authors:  Briallen Lobb; Daniel A Kurtz; Gabriel Moreno-Hagelsieb; Andrew C Doxey
Journal:  Front Genet       Date:  2015-07-21       Impact factor: 4.599

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